Gossypium hirsutum (upland cotton): 107915561
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Entry
107915561 CDS
T04793
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107915561
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107915561
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
107915561
NCBI-ProteinID:
XP_040933933
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Position
A10:107504875..107506579
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AA seq
396 aa
AA seq
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MKLSGCNLPGIIVMVFVMLSSSSTSAITNFNVLNFGAIPTGRTDSADSFLKAWNAACGTA
DSTFIYVPKGRYLVGPLAFKGQCKSSQIIIRIDGTIVAPLDYGVLGKSNNWFSFEDVSGV
SIIGRGTFDAKGPSLWACKASNSNSCPSGATTLSFTKSNNIRINGLTSLNSQMFHIVING
CQNVHLEGVKIVAAGNSPNTDGIHVQLSRNVEILSTSIKTGDDCISIGSGTENLWIEQVT
CGPGHGISIGSLAKDLEEEGVQNVTVKKTIFSNTQNGLRIKSWARPSNGYVQGIRFIDSV
MKNVQNPIVIDQNYCPRNENCPGQVSGIKINDIVYEDIRGTSSTPIAIKFDCSVKNPCTE
IKLQNVNLTYLNKTAQSFCSNVVGKAIDLVRPNSCL
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttctggttgtaatttacctggaattattgtgatggtctttgttatgctaagt
tcaagttcaacatctgcgattacaaactttaatgtcttaaactttggggctatcccgact
ggtagaaccgattcagcggacagtttcctcaaggcatggaatgcagcctgtggcacggca
gactcgaccttcatatatgtgcccaaaggacggtatttggttggtccattggcttttaaa
ggccaatgcaaaagctctcagatcattataagaatcgatggcacaattgtggctcctttg
gattatggagtgctgggaaaatcgaataattggttcagctttgaagatgtgagcggtgtt
tctataattggtcgaggtacatttgatgctaaaggaccttctctttgggcctgcaaagct
tccaactccaactcatgtccttccggggccacgacactgagttttaccaaatccaacaac
atcaggatcaatggattaacgtctttaaatagccaaatgtttcatattgtgatcaatgga
tgccaaaatgtgcacctcgaaggagttaagatcgtcgctgctggtaatagtcccaacact
gatggcatccatgtccaattatcgagaaatgtggaaattttaagcacttccattaaaact
ggagatgattgcatctcgattggttctggcactgaaaatttatggattgaacaagtcact
tgtggtcctggtcatggcatcagcattggaagtttggcaaaggatttggaagaggaagga
gtccaaaatgttacggtcaaaaagacaattttttccaacactcaaaatgggttaaggatc
aaatcatgggctaggcctagtaacggatatgttcaagggatacgatttatagattccgtg
atgaaaaatgttcaaaatcctattgtgattgatcaaaattattgtcctcgcaatgaaaat
tgcccgggtcaggtttcgggaataaagattaatgatatcgtgtatgaagatataagagga
acatcatcgacacccatagctataaaattcgattgtagtgtcaaaaacccgtgcactgaa
ataaaattgcaaaatgtgaatttgacatatttgaacaaaacagctcaatcattttgtagc
aatgtggttggaaaagcaattgatttagttcgaccaaacagttgtttgtaa
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