Gossypium hirsutum (upland cotton): 107916098
Help
Entry
107916098 CDS
T04793
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107916098
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107916098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
107916098
NCBI-ProteinID:
XP_040934419
LinkDB
All DBs
Position
A10:11934397..11936521
Genome browser
AA seq
415 aa
AA seq
DB search
MQELIFTVFITISYVLTPGASGATSLFNVVDYGAVGDGKTDDSAAFSKAWKATCNAPSRN
PILIIPATKIFLLKPVTFSGPCKPTSIHVLMSGNIVAPNSKMAWKGFHINRWLAFTHVNG
LTIIGSGTINGRGAAWWSQPCLHKVPKGVTCKGPTALTFYSCNGLVLKGIRHINSQRNHI
TISNCKDVTFSNLHISAPKTSPNTDGIDISGSSNVQILNSFIGTGDDCIAISSGSSHINI
TGIACGPGHGISIGALGAHGEDTVEEVHVRNCTLKGTMTGVRIKTWQGGVGNARRISFEK
IRFIRADSPIIIDQYYCPSRVNCKNETSGIRISDVSYRSIIGTSTTDKVINLSCDQNVGC
TNIQFNYVYITSTVPGKKAYAFSFNAHGNYTHTRPVVKGLQAYPGEEGGYLKKDG
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaactgatcttcaccgtttttattacaatttcgtacgtcctcacaccaggagca
agtggtgcaacaagtttatttaatgtggtagattatggagcagtgggagacgggaaaacc
gatgattctgctgccttttccaaagcatggaaagctacctgcaatgctccttcaagaaat
ccaatcctcattataccagcgacgaagatattcttactgaagcctgtcactttcagcggt
ccctgcaaacccacttctatccatgtattgatgtcaggaaacatcgttgcacccaattcc
aaaatggcatggaaaggttttcacattaacaggtggcttgccttcacacatgtaaacgga
cttaccatcattggatctggcacaattaatggccgaggggctgcatggtggtcacagcct
tgtttgcataaggttccaaagggtgtaacctgcaaaggaccaacagcactgactttttat
agttgcaatgggcttgtgctcaagggaataagacacattaatagccaaagaaaccatatt
actatatccaattgcaaagatgttaccttctctaacctgcatataagtgccccaaaaaca
agccctaacactgacggtatcgacatatccggttccagcaacgttcagatactgaattct
ttcatcggcactggggatgattgcatagctattagctcaggttcatcccacatcaatatt
actggcattgcatgcggccctgggcatggcatcagcattggagcattgggtgctcatgga
gaggacacggtggaggaagtacatgtgcgaaattgtactttaaaaggaaccatgacagga
gtcagaattaaaacatggcagggaggcgttggaaatgcacggaggatctcattcgagaaa
atcaggttcattcgagctgatagccctattattatcgaccagtattattgccccagtaga
gtgaattgcaaaaacgagacatcgggcattaggatcagcgatgtatcgtacagatccatc
attggaacttcaaccacagacaaggtgatcaatttgagctgcgaccagaatgttggttgc
accaacattcagttcaattatgtctacataacgtccacggttccagggaagaaggcctat
gccttcagcttcaacgctcatggaaactacacccataccagacctgttgtgaagggactg
caagcttatccaggagaagaaggtggctacttgaagaaagatggatga
DBGET
integrated database retrieval system
