Gossypium hirsutum (upland cotton): 107916208
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Entry
107916208 CDS
T04793
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107916208
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_4
HisKA
PAS_9
PAS_8
PAS_3
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
107916208
NCBI-ProteinID:
XP_016700852
UniProt:
A0A1U8KEL4
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Position
D10:52781781..52787351
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AA seq
1193 aa
AA seq
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MTAASSCPRGSVTTLPPKPIPYNLHYIYTTDRISSQKYHHPPIPNKPPLNKVMSSGSRAV
HSHQRRQQQQQQQQAQSSGTSNMRASHTHHQADSISKAIAQYTVDARLHAVFEQSGESGK
SFDYSQSVKTTTQSVPEQQITAYLSKIQRGGHIQPFGCMIAVDEPSFRIIAYSENAREML
GITPQSVPNLERIEVLAIGTDVRTLFTPSSAVLLEKAFAAREITLLNPVWIHSKNSGKPF
YAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISELQSLPGGDIKLLCDTVV
ESVRQLTGYHRVMVYKFHEDEHGEVVAESKRPDLDPYIGLHYPATDIPQASRFLFKQNRV
RMIVDCHATPVRVVQDDGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGND
DEATGGRNTMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFALQLNMELQLAAQMSEKRV
LRTQTLLCDMLLRDSPSGIVMQSPSIMDLVKCDGAALYYQGKYYPLGVTPSEAQIKDIVE
WLLAFHGDSTGLSTDSLSDAGYPAATSLGDAVCGMAVACITKRDFLFWFRSHTAKEIKWG
GAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFKDAEAS
NSKAVAHAQLGGLELQGVDELSSVAREMVRLIETATAPILAVDVEGHINGWNAKAAELTG
LSVEEAMGKSLVHDLVYEEYQETVDRLLSHALQGEEDKNVEIKMRTFGLEDHKKAIYVVV
NACSSKDYMNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFVSDENT
CCLEWNTAMEKLTGWPRGEIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHNAIGGQEADK
FPFAFFDRNGKFVQALLTANKRVNMEGQIVGAFCFLQIATPELQQALRVQRQQEKKCFAR
MKELTYICQEIKSPLNGIRFTTSLLEATELTENQKQFLETSVACEKQMLKIIRDVDLESI
EDGSMELEKAEFFLGSVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVL
ADFLLNMVRYAPTGEGWVEIHVRPSLKQISEGVTIVHTEFRMVCPGEGLPPELVQDMFHS
SRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPVPQSGSKNED
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagcatcttcttgcccacgtgggtctgtcactactttgcccccaaaacctatc
ccttacaatttacactacatttacactacggacagaatttcctcccaaaaatatcatcat
ccccccatccccaacaaaccaccacttaacaaagtcatgtcttcaggcagcagagcagtt
cactcccatcagcgacgccaacaacagcagcagcagcagcaagctcagtcctcaggcaca
agtaacatgagagcatcccatacccaccaccaggctgactctataagcaaagccattgct
cagtacacagtcgatgctcgcctccacgctgttttcgagcagtcgggggaatcgggtaag
tcatttgattactcccaatccgttaaaactactacccagtcggttcccgagcagcaaatc
actgcttacttgtctaaaatccaaagagggggccacatccagccatttggctgcatgatt
gcggttgacgaacccagtttccgtatcatcgcctacagcgaaaacgcacgcgagatgctt
gggattacccctcaatccgttcccaatttggagaggatcgaagttcttgcaattgggacc
gatgttcgaacccttttcactccttccagcgctgttttgttggaaaaagccttcgccgcc
cgcgagatcacgttgctgaatccggtttggattcactctaagaattcggggaagcccttt
tacgctattttacataggattgatgttggaattgtgattgatttagaacctgctagaact
gaggatcctgccttgtctattgccggggctgtccaatcgcagaaattagctgtccgtgct
atttctgagttacagtccctccctggaggcgatattaagcttttgtgtgacacggttgtg
gaaagtgtgagacagcttactggatatcatagggtaatggtttataaatttcatgaggat
gagcatggggaggtcgtggccgagagtaaaaggcctgacttggacccttacataggttta
cattatccggcaacggatattccccaggcttcaaggtttttgtttaagcagaatagagtt
aggatgatagtggactgtcatgccacgccagtgcgtgtggttcaggatgatgggttaatg
caacctctgtgtttggttggatccactcttcgggcccctcatggttgccatgctcagtat
atggctaacatggggtcaattgcttctttggcgatggcagttattatcaatggaaatgac
gatgaagctactgggggaagaaatacaatgaggctttggggtcttgttgtttgtcatcat
acttctgcacgttgtattccatttccacttcgatatgcttgtgagttcctaatgcaagca
tttgcacttcaactgaatatggaattgcaattggcggctcaaatgtcggagaaacgtgtt
ttgaggactcaaactcttttgtgtgatatgcttcttcgtgactctccatctggcattgtc
atgcaaagtcccagcattatggatcttgtgaaatgtgatggggctgccctttattaccaa
ggtaagtattacccattaggtgtgacgccatctgaggcccagataaaagatattgtcgag
tggttgttggcattccatggagattcgactggtttaagcaccgatagtttgtctgatgct
ggttaccctgcggcaacctcacttggggatgcagtttgtgggatggctgttgcttgtatt
actaaaagggattttctattctggttccggtcacacacagcaaaagagatcaaatggggt
ggtgcaaagcatcatccagaggacaaagatgatggtcaaagaatgcatccacgatcttca
ttcaaggcatttttggaagtggtcaagagtcggagtttgccatgggataatgctgaaatg
gatgcaattcactcactgcagcttattcttcgtgactcattcaaggatgctgaagcaagt
aattctaaagccgttgcacatgctcagcttgggggactagagctacaaggggtggatgag
cttagttcagttgcaagggaaatggtgaggttaatagagactgcaactgctcccatattg
gccgtagatgttgaaggtcatattaatgggtggaatgcaaaagctgcagaattaacagga
ctctcagttgaggaagccatggggaagtctttggttcatgaccttgtttatgaggaatat
caagaaacggttgacaggcttcttagtcatgctttgcaaggcgaagaagataaaaacgta
gagataaaaatgaggacttttggcttagaagatcataaaaaggctatatacgtggtggtg
aacgcttgctctagtaaggattatatgaataatattgttggagtttgctttgttggtcag
gatgttacaggccaaaaggtggtgatggacaaattcatccacatacaaggtgattacaag
gccattgttcatagtcccaatcctttgattccaccaatatttgtttcggatgaaaacacg
tgttgcttggagtggaacactgccatggaaaagctcactgggtggcctcggggggaaatc
atagggaaaatgttagttggtgaggtttttggcagttgctgtcgcctcaagggtccagat
gctttgacaaaattcatgattgttttacataatgcaattggagggcaggaggcagataag
ttcccttttgccttctttgaccgcaatgggaaatttgttcaggcactgttgacagcaaac
aaaagggtgaatatggaaggccagattgtaggagcgttttgtttcctgcagattgcaact
ccagagttgcagcaagcactgagagtccagaggcaacaggagaaaaaatgctttgctaga
atgaaagagttaacctacatttgccaggaaataaagagtcctttgaatgggatccgcttt
accacctcacttttagaagctacagagctgactgaaaaccaaaagcaatttcttgagact
agtgttgcttgtgagaagcaaatgttgaagatcataagagatgttgatttggagagcatt
gaggatggttctatggagcttgaaaaggctgaatttttccttgggagtgtcataaatgct
gttgttagccaagtaatgctactgctgagggaaagaaatctacagttaattcgggatata
ccagaggagatcaaaacattggctgtttatggcgatcaagcaagaattcaacaggtattg
gctgattttttgttgaatatggttcgttatgcaccaactggtgaaggttgggtagagatt
catgttcgtccatctttgaaacaaatatccgaaggagtcaccattgttcatacagaattc
aggatggtatgccccggtgaaggccttcctcctgagttggttcaagacatgttccatagc
agtcgatggatgacacaggagggcttagggttgagcatgtgccggaaaatcttaaagctc
atgaatggtgaggtccaatatatcagagagtcggaaagatgttatttcttaattactcta
gaacttcctgtacctcagagtggctcaaaaaatgaagactag
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