Gossypium hirsutum (upland cotton): 107916410
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Entry
107916410 CDS
T04793
Name
(RefSeq) oligouridylate-binding protein 1B
KO
K13201
nucleolysin TIA-1/TIAR
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107916410
03041 Spliceosome [BR:
ghi03041
]
107916410
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
107916410
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107916410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107916410
NCBI-ProteinID:
XP_016701182
UniProt:
A0A1U8KFJ0
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All DBs
Position
D10:5585044..5590101
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AA seq
421 aa
AA seq
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MQHQRLKQQQQALMQQALLQQQSLYHPGILAPPQIEPIPSGNLPPGFVPSTCRSVYVGNI
HTQVTEPLLQEVFASTGPVEGCKLVRKEKSSYGFVHYFDRRSAALAILSLNGRHLFGQPI
KVNWAYASGQREDTSGHFNIFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQKTGRSRG
FGFVSFRNQLEAQSAINDLSGKWLGSRQIRCNWATKGASSNDDKQSSDAKSVVELTNGSS
EDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLELHRHFHALGAGVIEEVRVQRDKGFGF
VRYSTHAEAALAIQMGNAQSYLCGKQIKCSWGSKPTPPGTSSNPLPPPAAPLPGFSATDL
LAYERQLAMSKMGGVHALMHPQGQHPLKQAAMGVGAAGASQAIYDGGYPNVAAAQQLMYY
Q
NT seq
1266 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaccagaggctgaagcaacagcaacaagccttgatgcaacaagctcttcttcaa
cagcagtctctctatcatcccggcatcttagctcctcctcagatagagccaattcccagt
ggaaatctgcctcctggttttgttccaagcacttgccgcagtgtgtatgtgggaaatatc
catacacaagtgactgaaccactacttcaagaggtttttgcaagtactggccctgttgaa
ggttgcaagcttgtcagaaaggaaaagtcatcgtatggattcgtccactacttcgatcgc
agatcagctgctcttgctatattgtctctaaatggaaggcatttgtttggacagcctatc
aaggtcaattgggcatatgctagtggtcagagagaggatacatcaggtcactttaacatt
tttgttggggatctcagtcctgaggttactgatgcaatgctgtttgcatgcttttcagtc
tatcccagttgttcggatgcaagggttatgtgggatcagaaaactgggcgttcaagagga
tttgggtttgtttcattccgtaaccagctggaagcacaaagtgcaattaatgacttaagt
ggaaagtggcttggcagtcggcagattcgttgtaattgggcaacaaagggtgctagtagc
aatgatgacaagcagagctctgatgccaaaagtgtggtggaacttaccaatggctcatct
gaggatggtaaagagacaaccaatactgaggctcctgagaataatcctcaatatactact
gtttatgtgggcaatcttgctccagaggtcacccaacttgaactccatcgtcacttccat
gctcttggtgctggggtgatagaggaggttcgggtccagcgtgataaaggctttggcttt
gtgagatacagtactcatgctgaggcagctttggctattcagatggggaacgctcagtca
tatctatgtggcaagcaaataaagtgttcttggggcagcaagcctacaccaccagggaca
agctccaatccacttccccctcctgcagcaccattacccggtttttcagccactgacctt
ttagcttacgaacgacaacttgccatgagcaagatgggtggagttcatgctctaatgcac
ccacagggacagcatcctctgaagcaggcagcaatgggggtgggtgctgctggagcaagc
caggctatatatgatggtggatacccgaatgttgctgctgcccagcagctaatgtactat
cagtaa
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