Gossypium hirsutum (upland cotton): 107917092
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Entry
107917092 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107917092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107917092
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107917092
Spliceosome [BR:
ghi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107917092
Complex B
107917092
Complex C
U2 SnRNP specific factors
107917092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107917092
NCBI-ProteinID:
XP_016701968
UniProt:
A0A1U8KLU5
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Position
D08:complement(4848967..4852894)
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AA seq
776 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHSHDNYEDNDLDDIDYANNNDTS
NDADTNDPITSNGNGGEDDEIDPLDAFMQGIEEDLKAKPTPKPKEKAERYRDDEDEDDPV
ESFLRSKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGLLEYDSDDNPVVVDKKKIEPI
PALDHSSIEYEPFNKDFYEEKASISGMSEQEVAEYRKSLAIRVSGFDVPRPVKRFEDCGF
APELMRAIAKQGYEKPTTIQCQSLPIVLSGRDVIGIAKTGSGKTASFVLPMIVHIMDQPE
LQKEEGPIGVICAPTRELAHQIFLEAKKFAKAYGIRASAVYGGMSKLDQFKELKAGCEIV
VATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT
MPRKVEKLAREVLSDPIRVTVGEVGTANEDITQHVHVIPSDSEKLPWLLEKLPGMIDEGD
VLVFASKKATVDEIESQLSGKGFKVAALHGDKDQASRMEILQMFKSGIYHVLIATDVAAR
GLDIKSIKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGIAYTLITQKEARFAGELVNSLIA
AGQNVSMELMDLAMKDGRFRSKRNARKGGGKKGRGRGGSGCGRGVRGVDFGLGIGYNPES
SNASSQAVQSRNAAVNSLKTGMMAQMKSNFVAASSNPPSQGFNNSSSIRRPTLSGFVSGG
TIGGDINRSQMATSFSTAPTSGLNSSQNTGENTTQRSSESSRDRPRERRRPSGWDR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgcaaattcggattcgaagggtttgggataaaccgtcaatcaacctacaac
ttcgagcgatcccaagctcctcaacgcctttatgtccctccatcctctcgtcattcccac
gacaactacgaagataacgaccttgacgacatcgattatgccaataacaacgatacctcc
aacgacgccgacaccaatgaccccatcaccagcaatggcaacggaggggaagatgacgaa
atcgaccctctcgacgccttcatgcaaggtattgaggaggatttgaaagcgaagccgact
ccgaagcccaaggagaaggctgagaggtatagagacgatgaagatgaggatgatccagtg
gagagttttttgaggtcgaagaaggatgttgggctgacattagcggcggatgctttgcgt
gctgggtatgattcggatgaggaggtttatgccgctgccaaggctgtagatgcgggtttg
ttggagtatgattctgatgataatcccgtggttgtcgacaagaagaagatcgagccgatt
ccagcccttgatcacagttccattgagtatgaaccgtttaacaaagatttttatgaggag
aaggcctcaatttcaggaatgagtgagcaggaagttgctgaatacagaaagagtttggct
attcgtgtttctggttttgatgtcccaagacctgttaagagatttgaagactgtggtttt
gcaccagagttaatgcgtgctattgcaaaacaagggtatgaaaagccaacaactattcag
tgccaatccttacctattgtcctctctgggagggatgttattggtatagcaaaaactggt
tctggtaaaactgcttcttttgtgcttcctatgattgtccacattatggatcagcctgaa
cttcagaaggaggaaggtccaattggagtgatatgtgcacctacccgagaactagcacac
caaatcttcttggaagcaaagaaatttgcaaaagcctatgggatacgtgcctctgctgtg
tatggtggaatgtccaaacttgatcaattcaaggaacttaaggcaggatgtgagatagtc
gttgctacacctggtcgattgatagacatgctaaaaatgaaggcactgacaatgatgaga
gcaacttatttggtacttgatgaggctgatcgaatgtttgaccttgggtttgagcctcag
ataaggtccattgttggccaaataagacctgaccgtcagacattactattttcagcaaca
atgccccgcaaagttgaaaagttagcaagggaagttctcagtgacccaatcagagtcaca
gttggagaggtgggaacagctaatgaggatattactcagcatgttcatgtaattccttct
gactctgagaagttaccctggcttctcgagaagctacctggaatgattgatgagggtgat
gttttggtgtttgcctccaagaaagctactgttgatgagattgaatctcagctctctggt
aagggttttaaggttgctgcccttcatggtgacaaagatcaggcttctcgaatggaaatt
ctacagatgtttaaatctggcatctatcatgttctcatcgcaactgatgttgctgctcgt
ggtcttgacatcaagtcaattaagtcagttgtgaactatgatattgcaaaggacatggac
atgcatgtgcaccgtattggtagaacaggtcgtgctggtgacaaagatggcattgcgtat
actctgataactcaaaaggaggctcggtttgctggtgaattggtaaatagtttaattgct
gctgggcagaatgtttccatggaactgatggatcttgctatgaaggatgggagatttagg
tccaagcgtaatgcaagaaaaggaggtgggaagaaaggcagaggaaggggcggcagtggg
tgtggtcgaggtgtgcgtggagttgattttggtctgggtattggatataatccagaatcc
agtaatgcttcatctcaggctgttcaaagtcgaaatgctgccgtaaattctctcaaaact
ggcatgatggcacaaatgaagagtaactttgttgctgcttcatcaaaccctccaagtcaa
ggcttcaataacagttcaagtatcaggagaccaactttatctggatttgtatctggcggt
accatcggtggagatataaataggtctcaaatggccacttcattcagcactgctcctaca
tcaggattgaacagttcacaaaatactggagaaaacactacccagaggagctccgagagt
tctagagatagaccaagagaaaggcgaaggccctctgggtgggaccgttag
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