Gossypium hirsutum (upland cotton): 107917602
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Entry
107917602 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107917602
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107917602
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107917602
NCBI-ProteinID:
XP_016702412
UniProt:
A0A1U8KIY9
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Position
A01:complement(6939867..6942064)
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AA seq
454 aa
AA seq
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MEVTKVRFSFFFSFAALIPGLWANIAEFDDFWKQREEEAWNITLATYEPNPENVTNHLSY
NVNKFLKETSANQTIDFEDGITNNTRRYLRGKHKKYTGPCMATNPIDRCWRCKKNWAKNR
KRLAKCVLGFGHRTHGGSKGKYYLVTDNSDHDVLNPKLGTLRHAVIQKRPLWIIFARTMH
IKLSQELIVQSHKTIDGRGADVHIAYGAGITLQFVHNVIIHNIHIHRIVPSSGGLIRDSE
DHFGYRTVGDGDGISIFGSSNIWLDHISMSECHDGLIDAIQGSTAITISNCHFTHHDAVM
LLGASDSYSKDKFMQVTIAFNRFGKELLQRMPRCRWGFFHVVNNDYTHWKMYAIGGSMHP
TIISQGNRFIAPHDPNAKEVTNRLYASESEWKNWIWRSERDVLLNGATFRTSGPLSPPHL
KFNRKEMIKAKPGAYVRRLTRFAGTLNCIKRIKC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaactaaagtgaggttttcttttttcttttcgtttgccgcactaattccagga
ttatgggcaaatattgctgaatttgatgacttttggaagcaacgtgaggaagaagcttgg
aatattaccttggcaacttatgagccaaacccagaaaacgtcaccaatcatttgagctat
aatgttaacaagtttcttaaagaaactagtgccaaccaaaccatagattttgaggatggt
attactaacaacacgagaagatacttgagaggaaaacacaagaagtacactggtccgtgc
atggcgaccaatccaattgataggtgttggcggtgtaagaagaactgggccaaaaatcgt
aaaagattggcaaaatgtgtgcttggttttggccatagaactcatggtggaagtaagggg
aagtattatttggtgacagataattctgatcatgatgttctaaacccaaaactaggaacc
ttacgtcacgctgtgatccaaaaaaggccattatggatcatttttgctcgtaccatgcac
atcaaattgtcacaagagctaatagttcaaagtcataagacaatcgatggccgtggagca
gatgttcatatagcatatggagctggaattacacttcaatttgtgcacaatgtcatcatt
cacaacattcatatccatcgcattgttccaagttctggtggcctaatcagggactctgaa
gatcactttggttacagaacagtaggtgatggagatggaatttccatatttggatcatca
aatatttggcttgatcacatttctatgtctgagtgccatgatgggcttattgatgcaatc
cagggttcaactgccatcaccatttcaaattgccatttcacccatcacgacgctgtgatg
ttgttaggagcaagtgatagctattctaaagataaattcatgcaagtgacaatagcattc
aaccgttttggcaaggaattattacaaagaatgcctagatgtcgatggggtttctttcat
gttgttaacaatgactacacacattggaaaatgtatgctattggtggtagcatgcatccc
accattatcagccaaggtaacaggttcattgctccgcatgaccccaatgccaaagaggta
accaataggctctatgcatcagagtcagaatggaaaaattggatatggagatcagaaaga
gacgtactccttaatggagccacctttagaacttctgggccactctcgccaccccatttg
aaattcaacagaaaggaaatgatcaaagccaagcctggagcatatgtcagaagactcact
cgtttcgcagggactcttaactgtataaaaagaatcaaatgttag
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