KEGG   Gossypium hirsutum (upland cotton): 107917744
Entry
107917744         CDS       T04793                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107917744
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107917744
   03041 Spliceosome [BR:ghi03041]
    107917744
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     107917744
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107917744
Spliceosome [BR:ghi03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    107917744
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 107917744
NCBI-ProteinID: XP_040942828
LinkDB
Position
D01:complement(6150200..6156966)
AA seq 438 aa
MQYMDPTKKRKLDENGTVSAQSEPDPITKLTPQDGRKLIERFTVDQLLDILQDAVCRHVD
VLSAVRSIADQDPSQRKLFIRGLGWDTTTDGLRSLFSVYGELEEAVVILDKTTGKSKGYG
FVTFKHVDGALLALKEPSKKIDGRVTVTQLAAAGNSATNSNPVDIHMRKIYVANVPYDMP
ADKLLGHFSQYGEIEEGPLGFDKQTGKSRGFALFVYKTAEGAQAALAEPVKNIDGRQMNC
KLAIEGKKGKQGQDGMMQSGGGVPGNAEMGMGGHGGGYGGPGSYGGFSGGMQGPPGPMGH
PHPLNSSGVGVGALSGNGGVAAGGYSGLGGPYGGYGGQGSTGYGGPGSAGYGGPGSTVYG
GLTGAGAGGGLGAASGGSSLYRMPPSSAGMPTGGYPETAHYSLSSSAAFPSQLHQGAGTS
PAPRVPPGAMYPNGPPFY
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgcaatacatggatccaactaagaaacgcaagttagatgaaaacggtactgtttcagcg
cagtcggaacctgaccctatcaccaaactaaccccacaagatggccgcaaacttattgag
cgattcaccgtcgaccaactcctcgacatcctccaagacgccgtttgtcgtcacgtcgac
gttctttcagccgttcgatctattgccgatcaagatccgtctcaacggaagctcttcata
cgtgggttgggttgggataccacaactgatggccttcgttcactcttttcggtctatgga
gaacttgaagaagcggttgttatcctcgacaagactaccgggaaatcgaaagggtacgga
tttgttacgtttaagcacgtagatggtgctttgcttgctcttaaagaacccagtaagaaa
atcgacgggagagtcaccgtgacacagctggcggcggcagggaattcggcgacgaatagt
aacccggtggatattcatatgaggaagatttatgtagccaatgtaccgtatgatatgccg
gcggataagttattgggccatttttctcagtatggggaaatagaagaggggcccttgggg
ttcgataagcagacggggaaatcaaggggttttgctcttttcgtttataagacagcagaa
ggggctcaggcagcgttagcggagcctgtaaagaacattgatgggagacaaatgaattgt
aagctggctattgaagggaaaaaagggaagcaaggacaagacgggatgatgcaaagtggc
ggtggggttccgggaaacgcagagatgggaatgggaggacatggtggaggatatggtggg
ccgggaagttatggtgggttttcaggtgggatgcaagggccgcctggtcctatgggtcat
cctcatcccttgaattcatcaggagttggagtgggcgctttgagtggaaatggcggtgtt
gctgctgggggttattctggacttggtgggccgtatggtgggtatggtggacaaggttca
actggctatggtggaccaggatcagctggctatggcggaccaggttcaactgtttatggt
gggttgactggtgctggtgcggggggtgggttgggtgctgcaagtggagggtcttcattg
tatagaatgccgccgagttcagctgggatgccaactggtggttatccagagactgctcat
tatagcttgtcttcctcggctgctttccctagtcagcttcaccaaggggctgggacatcc
cctgcgccaagagttccacccggtgcaatgtatcccaatgggccaccgttctactga

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