Gossypium hirsutum (upland cotton): 107918142
Help
Entry
107918142 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X2
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107918142
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107918142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
107918142
NCBI-ProteinID:
XP_016703160
UniProt:
A0A1U8KR11
LinkDB
All DBs
Position
A01:33826293..33830924
Genome browser
AA seq
644 aa
AA seq
DB search
MPSQGVKLYVQDKHVVLDNGILQVTISNPDGILTAIQYNGIDNLLAVENQEADRGYWDLV
WNLAGSKGTKGKFDRIEATSFEVIVENEDQVELSFTRTWNPSLEGKVVPLNIEKRFIMLR
NSSGFYTYAIYEHLKEWPAFNLDRFRVAFKLRKDKFHYMAMADNRQRYMPLPDDRLPYRS
QTLAYPEAVLLVDPMETEFRGEVDDKYQYSCENKDNRVHGWICNDPPVGFWQITPSDEFR
SAGPHKQNLTSHVGPTTLAVMHSVHYSGEDLILKFGSNEAWKKVFGPIFIYLNSLSDAGG
NPLSLWEDAKQQMRIEVQDWPYTFPASQDFPQSHQRGNVSGRLLVKDRYVCKDYIPANGA
YVGLAPPGDVGSWQSEVKGYQFWTRADEDGYFCINNIWTGDYNLYAWVPGFIGDYKYDVI
ITPSAGYDIFMGDLVYEPPRDGPTLWEIGVPDRTAAEFYVPDPSPMFVNRLYVNHPDRFR
QYGLWERYADLYPDRDLVYTVGVSDYTKDWFFAQVTRKNDDNTYQGTTWQIKFKLDCAAN
ETETYKLRLALATAHAAELQVRVNDDGKSPLFSSGQIGKDNTIARHGIHGLYRLYHVGIP
GNLLLEGDNTIFLTQPKSTSPFQGIMYDYIRLEGPASSNGNKKP
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgccatctcagggagtgaagttatatgtccaagataaacatgtggtcttggataatggt
atactgcaggtcacaatatctaatccagatggcattctcactgctattcaatataatggc
attgacaatttgcttgctgttgaaaaccaggaagctgatagagggtattgggacctcgtc
tggaatctagcaggaagcaaaggaacaaagggtaaatttgacaggattgaagcaacaagt
tttgaagtaatagtggaaaatgaggatcaggtggagctttcatttactagaacatggaat
ccttcccttgaaggcaaagtcgttcccttgaacatcgagaagaggtttataatgcttcgt
aattcctcaggattctacacctatgcaatttacgagcacttgaaggaatggcctgctttc
aaccttgacaggttcagggttgcattcaagttgaggaaagacaagtttcattacatggca
atggcagacaacagacaaagatacatgcccttgcctgatgaccgtttaccttacagaagc
caaaccttggcttatccagaggctgtcctactggttgatccaatggaaactgagtttaga
ggagaggttgatgacaagtaccagtattcatgcgagaacaaggacaacagggtccatgga
tggatttgcaatgacccgccggtggggttctggcaaataactcctagtgatgagtttcga
tctgccgggcctcacaagcaaaaccttacctctcacgtcggcccgaccacccttgccgtt
atgcacagtgttcattattcaggagaggatttgatattgaaatttggaagtaatgaggct
tggaagaaagtttttggccccatttttatttatcttaattctttgtcggatgctggaggt
aacccactttcactttgggaagatgctaaacaacagatgagaattgaagttcaagactgg
ccctatactttccctgcttctcaagactttccacaatcccatcaaaggggcaatgtcagt
ggtagattactagtgaaagacagatatgtttgcaaagactacatacctgccaatggtgcc
tatgtggggttagcaccccctggagatgttggatcttggcagagtgaagtcaagggctat
caattctggactagagctgatgaagatggctatttctgcattaacaatatttggaccggt
gactataatctatatgcatgggttcctggtttcattggtgattataaatatgatgttatc
atcacccctagcgcagggtatgatatattcatgggtgatcttgtatatgaaccgccaaga
gatggccctacattgtgggaaattggagtcccggatcgcactgctgcagaattctacgtt
cctgatccgagtccgatgtttgtcaacaggttatatgttaaccatcctgacagatttagg
cagtatgggttatgggaaagatatgcagatttatatcctgatagagatttggtttacaca
gttggggttagtgactatacaaaagactggttttttgctcaggtcaccagaaagaatgat
gacaacacatatcaaggaactacatggcaaatcaagttcaaactagattgtgctgcaaat
gaaaccgaaacatacaaactacgattggcattggctactgcacatgctgctgaacttcag
gtaagggtcaatgatgatggaaagtctcctctattttcaagtggacaaattggtaaagac
aacacaatagccagacatggtatccatgggctttaccggctttaccatgtcggtattccg
gggaatctgcttcttgaaggagataacaccatatttctaactcaaccgaaaagcaccagc
cctttccaaggaattatgtatgactatattcgattagaaggccctgcatcttctaatgga
aacaagaaaccttaa
DBGET
integrated database retrieval system
