Gossypium hirsutum (upland cotton): 107918156
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Entry
107918156 CDS
T04793
Name
(RefSeq) ABC transporter A family member 1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
107918156
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ghi02000
]
107918156
Transporters [BR:
ghi02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
107918156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
SMC_N
RsgA_GTPase
AAA_29
nSTAND3
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
107918156
NCBI-ProteinID:
XP_040967056
LinkDB
All DBs
Position
A01:42339277..42371445
Genome browser
AA seq
1885 aa
AA seq
DB search
MATSKRQLKAMLRKNWLLKIRHPFITAAEILLPTIVILLLIGIRTRVDTQIHPAQPYIRK
DMFVEIGKGISPNFQQVLELLLAKREYIAFAPDTEQTRQMVNLISIKFPLLQLVSKIYKD
ELELDTYIQSDLYGTCDFRNCSNPKIKGAVVFHNQGPQFFDYSIRLNHTWAFSGFPDVKS
IMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSYIIFAAQQTESAIASQDIEIKA
LCSTGVTSSVGLPWTQFSPSNIRIAPFPTREYTDDEFQSIIKSVLGLLYLLGFLYPISRL
ISYTVFEKEQKIREGLYMMGLKDGIFHLSWLITYAFQFAISSVIITVCTMDNLFKYSDKT
VVFVYFFVFGLSAIMLSFLISTFFTRTKTAVAVGTLSFLGAFFPYYTVNDEAIAMVLKVI
ASFLSPTAFALGSINFADYERAHVGLRWSNIWRGSSGVNFLVCLLMMLFDTLLYCIVGLY
LDKVLPSENGVRYPWNFMFQKCFWKKRSAIKHHVSSYEVRVNDTISKRKNIFPRKDMSGP
AVEAISLEMKQQEIDGRCIQIKDLHKVYATKKGKCCAVNSLQLTLYENQILALLGHNGAG
KSTTISMLVGLLPPTSGDALVLGKSILTDMKEIRKGLGVCPQHDILFPELTVREHLEMFA
ILKGVKEDGLESAVTEMVDEVGLADKLNTVVLALSGGMKRKLSLGIALIGNSKVVILDEP
TSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMADGSLKCCGSSLFLK
HQYGVGYTLTLVKSAPTASIAADIVYRYVPSATCVSEVGTEISFKLPLAASSVFESMFRE
IESCIGRSVSNSETSISEDKNYFGIESYGISVTTLEEVFLRVAGCDFDEAESVQEGNNFV
SIDSIPTGEQVPKRISYAKLSGSYKKIIEGISSIVTRFCGLFVSIFLSFMHFLSMQCCSC
CMISRSIFWQHTKALLIKRAVSARRDRKTIVFQLLIPVIFLLFGLLFLKLKPHPEQQSVT
FTTSVFNPLLSGSGGGGPIPFDLSWPIAKEVAKNVEGGWIQNFKPTSYKFPDSERALADA
VEAAGPTLGPVLLSMSEFLMSSFNESYQSRYGAVVMDEQYDDGSLGYTVLHNSSCQHAAP
TFINLMNSAILRLATRDKNMTIRARNHPLPMTKSQRLQHHDLDAFSAAIIVNIAFSFIPA
SFAVPLVKEQEVKAKHQQLISGVSVISYWVSTYIWDFISFLFPSTFAMVLFYVFGLDQFI
GRGFLPTVIMFLEYGLAIASSTYCLTFFFSDHSMAQNVVLLIHFFTGLILMVISFIMGLI
KTTASANSFLKNFFRLSPGFCFADGLASLALLRQGMKDKSSDGIFDWNVTGASICYLGIE
AIGYFFLTLGLELLPTCKLTPARLMEWWRKKKIQGDDSVLEPFLKSSSEISVHLDEDIDV
RTERNRVLSGSIDNTILFLRNLRKVYPGGNHHRAKVAVDSLTFSVQAGECFGFLGTNGAG
KTTTLSMLTGEESPTEGTAFIFGKDISSNPEAARRHIGYCPQFDALLEYLTVQEHLELYA
RIKGVSDYRMNDVVLEKLVEFDLLKHADKPSYTLSGGNKRKLSVAIAMIGDPPIVILDEP
STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQ
HLKTRFGNHLELEIKPTEVSASDLENLCRIIQEMLFDIPSHPRSLLNDLEVCIGATDSIT
SGNASVAEISLSKEMIIVVGRWLGNEERVKTLISSRSNSDGLFGEQLSEQLVREGGIPLP
IFSEWWLAREKFSAIDSFIVSSFPGATFHGCNGLSVKYQLPYGEGLSLADVFGHLERNRN
GSGIAEYSISQSTLETIFNHFASNS
NT seq
5658 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttctaagagacaactcaaagctatgcttcggaaaaactggcttcttaagatt
cgtcacccttttatcactgctgctgagattttacttcctacgatcgtaattttgttgttg
attggtataaggactcgtgttgatactcaaattcatccagctcaaccatatataaggaaa
gatatgtttgtggagataggcaaaggtatatcccctaatttccaacaagttttggagtta
ttgttggccaaaagagagtatatagcctttgcacctgatactgaacaaacaaggcagatg
gttaacttaatttccatcaaatttcccttattgcagctagtttcgaaaatatacaaagat
gagctcgagctggatacatatatacagtcagatctgtatggtacttgtgatttcaggaat
tgctcaaatccaaaaattaaaggagcagtggtatttcataatcaaggtcctcagtttttt
gattatagtattcgcctcaatcacacatgggctttctctggatttcctgatgttaaaagt
atcatggacactaacggcccttacctcaatgacttggaattgggtgttaatatcatacca
acaatgcaatacagcttcagtggatttttgactctccagcaggttttagattcatatatc
atatttgctgctcagcaaacagaatctgccattgctagtcaagatatagaaataaaagca
ttgtgctcaaccggtgtaacatcatccgtcgggttaccttggacacagtttagcccttca
aatattagaatagctcctttcccaactcgagaatacacagatgatgagttccaatccatc
attaagagcgtcttgggcctgttgtacttgttgggatttctctatccaatctctcgcctg
atcagctatactgtgtttgaaaaggagcagaagataagagagggtctttatatgatggga
ttgaaagatgggatattccatctctcttggctcattacatacgcttttcagtttgctatt
tcatctgtgatcattacagtttgtaccatggataaccttttcaagtatagtgacaagaca
gtagtgttcgtgtatttctttgtctttggactcagtgcgatcatgctatcatttttgatc
tccacattctttacacgaacaaagactgctgttgcagttggaactctttcttttcttgga
gccttctttccttattacactgtcaatgatgaggcaattgcgatggtattaaaggtcatt
gcctctttcctgtcccctacggcctttgctcttggatctattaattttgctgactacgaa
cgtgcacatgtagggcttcgttggagcaacatatggcggggatcatctggagtgaacttt
ttggtttgccttctaatgatgttgtttgacacattgctgtactgcattgttggtctgtac
ctagataaggttcttcccagtgaaaatggagttcgctatccttggaactttatgttccaa
aaatgcttttggaaaaagagaagtgccataaaacaccatgtttccagttatgaagtaaga
gttaatgatacaatctccaaaaggaaaaacatctttcctagaaaggatatgtctggacca
gctgtggaagcaataagcttggagatgaaacaacaagaaatcgatggcagatgtatccaa
ataaaggacctgcataaggtatatgccaccaagaaagggaagtgctgtgctgttaactcc
ttacagttaaccttgtatgaaaatcaaattctagctcttcttgggcacaatggggctggt
aaaagtaccacaatatccatgcttgttggccttcttcccccaacatctggagatgccttg
gtgcttggaaaaagtattctaacagacatgaaagagatacgcaagggattaggggtctgt
ccacaacatgatatccttttcccagaattgactgtcagagagcatttggaaatgtttgct
atattgaagggtgtgaaggaggatggtttagagagtgctgtaactgagatggttgatgaa
gttggtttagcagataaactgaacactgttgtgctggcactttctggtggtatgaagagg
aaattatctcttggaattgcattgataggaaatagtaaggttgttattcttgatgaacct
actagtggcatggatccatattcaatgcgcttgacttggcagttaataaaaaaaataaag
aagggaagaataatattactaacaacacactcaatggatgaggctgatgaactgggggat
cggatagccatcatggctgatggttctttgaaatgctgtggaagttccctattcttgaag
catcagtatggtgttggttatacacttacattagtgaagagtgcaccaactgcttctata
gctgctgatattgtttatcgatatgttccatcagctacgtgtgttagcgaggttggaact
gaaatttccttcaagcttcctctggcagcttcatcagtctttgaaagtatgtttagggag
attgagagttgtataggaagatcagtttctaactcagaaacaagcattagcgaggataaa
aattattttggcattgaaagttatggcatatctgttacaaccttggaggaagtgttcttg
agggttgctgggtgcgactttgatgaagctgaatctgtccaagagggaaataattttgtt
tcaattgattctattcctactggcgagcaagtgcccaaaagaatttcctatgcgaagctt
tcgggaagctataaaaagattattgagggcatatcttccatagtgaccagattttgtggc
ctatttgtttctatatttctaagtttcatgcacttcttaagtatgcaatgctgcagctgt
tgcatgatttctaggtcaatcttttggcaacatactaaggcgttgctcataaagagagct
gtttctgcacgaagagaccgcaaaacaattgtttttcagcttttgattcctgtgatcttc
ttgctttttggtcttctttttctcaagcttaagccacatcctgagcagcagtctgtgaca
ttcaccacttcagtttttaatcctcttttaagtggttctggtggtggtggtccaattcca
tttgatctgtcctggcctattgcaaaagaggtagcaaaaaatgttgaaggagggtggatt
caaaattttaaaccgacttcatacaaatttcctgattcagaaagggctttagccgatgct
gtagaggcagcaggaccaactttaggacctgttttgctttcaatgagtgaatttctaatg
tctagctttaacgaatcataccagtcaaggtatggggcagttgtgatggatgagcagtat
gatgatgggagtttagggtatactgtattgcacaatagttcttgtcagcatgctgctcca
acctttatcaacttgatgaactctgcaattcttaggcttgctactagggacaaaaatatg
acgattcgagcacgtaatcatcctcttccgatgacaaaaagccagcgtttacagcatcat
gatctggatgcattctctgctgcaattattgttaacatagccttctcattcattcctgct
tcatttgctgttcccctcgtaaaggaacaggaagttaaagctaagcaccaacaactgatc
agtggtgtttctgtaatttcatattgggtttcaacgtacatatgggacttcatcagtttc
ttatttccttcaacttttgccatggttctcttctatgtgtttggtcttgatcaattcatt
ggaagaggcttcttgccaactgtcatcatgtttctggagtatggtctggcaattgcatca
tcaacatattgtcttacattcttcttctctgaccactctatggcccagaatgtggttctc
ctgatccactttttcacaggactcattctcatggttatttcatttatcatggggcttata
aaaacaactgcaagtgcaaattcttttctgaagaatttcttcagattatctcctgggttc
tgctttgccgatgggcttgcttcactggctcttcttcggcaagggatgaaagataaatct
agtgatgggatttttgattggaatgtaactggtgcttccatttgttatcttggaattgag
gccattggttacttttttctgactcttgggcttgaactcttgcctacttgtaaattgact
cctgcaagactaatggagtggtggaggaaaaaaaaaattcagggtgatgattctgttttg
gaaccttttctgaaatcttcctctgagatctctgttcaccttgatgaagacatagatgta
agaacagaaagaaatagggtactttctggttccattgacaataccattcttttcttgcgt
aatcttcgcaaggtgtatcctggaggaaatcatcaccgtgcaaaagtagctgtagactcc
ttaactttctctgttcaggctggagaatgttttggctttttgggaacaaatggagccggg
aaaactaccactttgtcaatgctaactggagaagaatctccaactgaaggaactgccttt
atttttggaaaagatatatcttcgaatccagaggctgcccgtcgtcatattggatactgc
cctcaatttgatgcattattggaatatcttactgtgcaagagcaccttgaactttatgca
aggataaaaggagtttcagactacagaatgaatgatgttgttctggaaaagctggtggag
tttgacttactaaagcatgctgataaaccatcatacacccttagtggagggaacaagcgt
aaattgtctgttgcaattgcaatgattggagatcctccaattgtcattcttgatgagcca
tccacaggtatggatcccattgcaaaaaggttcatgtgggaagttatatcccgcctatcg
accagacaaggaaagacagccgtgatccttactacccatagcatgaatgaagctcaagct
ctatgtaccagaattgggataatggttggaggcaggctaaggtgcatcggaagtccccag
cacttaaaaacaaggtttggaaatcatcttgagctggagattaaacccactgaagtgagc
gcttctgatttggaaaatctttgccgcattattcaagaaatgctctttgacattccttcc
catccaagaagcctactaaacgatcttgaagtctgtattggggccaccgactccattaca
tctggaaatgcatcagttgcagaaattagcttgtcaaaggagatgataattgttgttgga
cgttggcttggaaatgaagaaagagtgaagacacttatttcttcaaggtcaaattctgat
gggctttttggtgaacagttgtcagagcagttggttcgggaaggtggtataccattgcca
atattttccgagtggtggctagctcgagagaagttttcagccattgattcatttatagtc
tcttcatttcctggtgcaactttccatggctgcaatggattaagtgttaaatatcagtta
ccatatggggaaggtctctcattagcggatgtttttgggcacttggagagaaacagaaat
ggatcgggcatagctgaatacagtatcagccaatcaactcttgagactatattcaatcat
tttgcatctaattcatga
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