Gossypium hirsutum (upland cotton): 107918492
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Entry
107918492 CDS
T04793
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107918492
09123 Folding, sorting and degradation
03018 RNA degradation
107918492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107918492
03041 Spliceosome [BR:
ghi03041
]
107918492
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107918492
mRNA degradation factors
5'-3' decay
Lsm complex
107918492
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107918492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
107918492
NCBI-ProteinID:
XP_016703549
UniProt:
A0A1U8KS65
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Position
D08:3128249..3131282
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDQDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaggaaggaaacagtgttggatttggctaagtttgttgacaaaggtgttcag
gtcaaactcaccggtggtagacaagtcacggggaccctaaaaggatacgaccagctactg
aatcttgtcctggatgaagctgtagagtttcttcgagaccaggatgatccgttgaagact
actgatcagactaggcgtcttggcttgatagtttgtaggggcacagcagtcatgctggtg
tcacctaccgatggcacagatgagattgccaatcctttcatccagccagatggagcctga
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