KEGG   Gossypium hirsutum (upland cotton): 107918492
Entry
107918492         CDS       T04793                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107918492
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107918492
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107918492
   03041 Spliceosome [BR:ghi03041]
    107918492
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107918492
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107918492
Spliceosome [BR:ghi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107918492
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 107918492
NCBI-ProteinID: XP_016703549
UniProt: A0A1U8KS65
LinkDB
Position
D08:3128249..3131282
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDQDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcaggcaggaaggaaacagtgttggatttggctaagtttgttgacaaaggtgttcag
gtcaaactcaccggtggtagacaagtcacggggaccctaaaaggatacgaccagctactg
aatcttgtcctggatgaagctgtagagtttcttcgagaccaggatgatccgttgaagact
actgatcagactaggcgtcttggcttgatagtttgtaggggcacagcagtcatgctggtg
tcacctaccgatggcacagatgagattgccaatcctttcatccagccagatggagcctga

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