KEGG   Gossypium hirsutum (upland cotton): 107918535
Entry
107918535         CDS       T04793                                 
Name
(RefSeq) flap endonuclease 1 isoform X1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03030  DNA replication
ghi03410  Base excision repair
ghi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107918535
   03410 Base excision repair
    107918535
   03450 Non-homologous end-joining
    107918535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ghi03032]
    107918535
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107918535
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ghi04147]
    107918535
DNA replication proteins [BR:ghi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    107918535
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     107918535
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107918535
Exosome [BR:ghi04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   107918535
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc
Other DBs
NCBI-GeneID: 107918535
NCBI-ProteinID: XP_016703599
UniProt: A0A1U8KSB4
LinkDB
Position
D13:40203433..40207184
AA seq 414 aa
MGIKGLTKLLADNAPNAMKEQKLESYIGRKIAIDASMSIYQFLIVVGRRGTEMLTNEAGE
VTSHLQGMFTRTIRLLEAGMEPIYVFDGHPPDLKKKVLVKRYSKRANATEDLQQAMETGN
KDDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPAIEAPSEAEAQCAALCKSGKVYAVASED
MDSLTFGAPRFLRHLMGPGSRKVPVLEFEVGKVLEELNLTMDQFIDLCILSGSDYCESIR
GIGGQTALKLIRQQGSIEHILQNINKERYPIPDDWPYEEARYLFKEPLVCTNIEQFEMKR
SAPDDEGLITFLVTENGFNSDRVTKAIEKIKAAKNKSSQGRLESFSKSVANTSIPIKTKA
TKSMLQFPKSMFNSKIFSPQDSICSRPKGFSTMAPLCLHFKHSMVFSRGVCYGI
NT seq 1245 nt   +upstreamnt  +downstreamnt
atgggcattaagggtttaacgaagcttctagcagacaatgcaccaaatgcaatgaaggaa
cagaaactcgagagctatatcggtcgcaagattgccatcgatgccagcatgagtatttac
cagtttctcatagtggtcggccgtaggggcactgaaatgcttactaatgaggctggtgaa
gttaccagtcatctgcaaggcatgtttactcgcacaattcgacttcttgaagccggaatg
gaacctatctacgtttttgatggacatccacctgatttgaagaaaaaagtgctagtaaaa
cgttactcgaaaagggcaaacgctaccgaggatttgcagcaagccatggagactggcaat
aaggacgacattgaaaagttcagcaaacggactgtaaaagtcacaaagcagcacaatgaa
gactgtaaacggctattaagacttatgggggtgcctgcgattgaggctccttcagaagca
gaggcccaatgtgctgcactttgcaaatcaggaaaggtttacgctgttgcttctgaggat
atggactctttaacatttggagctcctagatttcttcgccatttaatgggccctggctca
agaaaagttccggtcttggagtttgaagttggaaaggttttagaggagctgaatctcacc
atggatcaattcattgacttgtgcatcctttctggaagtgattattgtgagagcattcgt
ggtattgggggacaaacagctttgaagctaattcgtcaacaagggtctatagagcatata
cttcagaacataaacaaagagaggtacccgattcctgatgattggccatatgaggaggct
cgatatctttttaaagaaccattagtctgcaccaatattgagcaatttgagatgaagcgg
agtgctccagatgatgaagggctgattacctttctggtgactgaaaatgggttcaatagt
gacagagtgacaaaggcaatagaaaaaattaaagcagccaagaacaagtcatcacagggc
cggttagagtcattttctaagtcagttgctaacacatctataccaattaaaacgaaggca
accaagtccatgcttcaatttcccaaatcgatgttcaactctaagatattctctccacaa
gacagtatctgttccaggcccaagggtttcagcaccatggcaccactgtgtttgcatttc
aagcactccatggtattctctagaggtgtctgctatggcatatga

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