Gossypium hirsutum (upland cotton): 107918725
Help
Entry
107918725 CDS
T04793
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107918725
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
107918725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_IP5PC_F
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_SPT8
WDR54
BCAS3_WD40
Beta-prop_SCAP
PEP5_VPS11_N
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
107918725
NCBI-ProteinID:
XP_016703801
UniProt:
A0A1U8KMU7
LinkDB
All DBs
Position
D13:53141365..53142656
Genome browser
AA seq
308 aa
AA seq
DB search
MSSPSHPIVLTSSLNGPVTAFDAVSGVPLCHFSGSRSPYHGLALVGNSFIATSHISAETS
SASIHLYNWWSSTALHNFLVPEPVAPLSATLDGLYLFAGGLSGSIHALSVPSGEILASYS
AHNKPVSCLKISEDGSLLISGGDDGTISFVPIFQIIEASPDKSSTSLMLQRFVAHDGSVT
AIDSIMAQCNSTIISSSLDCTIKIWGLLDGTKLRTVTFPCAIMGIALDQIRKEFFAAGSD
GFIYKGSINAESKKHVNQTQEFIRWAQKHDSGIVSLVMVSETNNLVSASEDGKVYIWEIE
TVDYAGWS
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctccttcgcatcctattgtcctcaccagctcccttaatggtcccgttactgcc
ttcgatgctgtctctggtgtccctctttgtcacttctctggcagcaggtctccttaccat
ggtcttgcccttgttggcaactcattcattgctacttctcatatatctgcagagacttct
tcagcctctattcatctctacaattggtggtcttcaacagctctacacaattttcttgtt
ccagaacctgttgcacccttgtcagctacccttgatggcttgtatttgtttgctggtggc
ctttcaggttctatacatgctctctcagttccttcaggggagatactcgcatcatattca
gcacataacaagcctgtttcctgcctcaaaataagtgaagatgggtcacttttgatatct
ggtggtgatgatggtacaatttcttttgttccaatctttcaaatcatcgaggcatcacct
gataagagctccaccagcttgatgttgcagagatttgttgcacatgatggctcagtgaca
gcaatagactctattatggcacagtgcaactctaccataatatcaagctcgttggattgc
acgattaagatttggggattgttggatggaacaaagttaagaacagtgacatttccatgt
gccattatggggatagcattggatcaaataaggaaagaattttttgctgcaggctcagat
ggattcatctacaagggatcaataaatgctgaaagcaaaaagcatgtgaatcaaacacag
gagttcattagatgggctcaaaagcatgacagtgggattgtatctttagttatggtgagt
gagacaaacaatttggtatctgcttcagaagatgggaaggtttatatatgggagattgaa
acagtggattatgcagggtggagctga
DBGET
integrated database retrieval system
