Gossypium hirsutum (upland cotton): 107919012
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Entry
107919012 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107919012
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107919012
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107919012
NCBI-ProteinID:
XP_016704043
UniProt:
A0A1U8KSR9
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Position
D13:complement(10704789..10706632)
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AA seq
442 aa
AA seq
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MAGVGNKSFSLILYFLCLGVIIPSLEAHIAEYDDYWRERELQAKENLEKAYNPNPEEVTQ
HFNDHVARTLMGFRTNSTRRMLKKQKGGPCGATNPIDQCWRCDRNWERNRKKLADCALGF
GRGTTGGKDGPIYVVTDPTDDVLNPSSGTLRHAVIQNRPLWITFARGMIIRLKEELLMTS
NKTIDGRGANVHIAYGAGITIQFAKNVIIHNIHIHNIFPSKGGKIKDGENHLGLRTRSDG
DGISLFGATNVWLDHLSVYKCSDGIIDAIQGSTAITISNCHFTDHNDVMLFGASDSYSAD
EKMQITVAFTRFGKNLVQRMPRVRFGFVHVVNNDYRHWIMSAIGGSSHPTIISHGNRFRA
PRNIAAKQVCKREYATEQEWKNWDWRSEGDLMLNGAIFTQSGDPKAAKKFGGYKMIAYKP
AHMVPLLVRWSGTLECRPNKPC
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtgggaaataaaagttttagcttgattttatatttcctgtgcttgggggtt
ataatccctagcctcgaggctcacatcgcagaatatgatgactattggagggaaagggag
ttgcaagctaaagaaaacctggagaaggcttacaatcctaacccagaggaagtcacccag
catttcaacgaccatgtggccaggaccttgatggggtttcgcaccaattccacgaggagg
atgttgaagaagcagaagggaggtccttgtggagcaaccaaccctatcgatcaatgctgg
cgatgtgaccgcaactgggaaaggaacaggaaaaagttggctgattgcgcacttggattt
ggccgtggtactaccggtggaaaggatggacccatttacgttgtcactgatcctaccgat
gatgttcttaacccaagttccggaactttgcgtcatgctgtgatccagaaccgcccactt
tggatcactttcgctagggggatgattattaggttgaaagaggagctccttatgaccagc
aacaaaaccatcgatggtaggggagccaatgtgcatattgcttatggggctggtattacc
atccagtttgccaagaacgtcatcattcataacatccatatccataacatcttccctagc
aaaggtggcaagatcaaggatggcgagaaccaccttgggttgaggacaaggagcgatggt
gatggcatctcccttttcggagcaaccaacgtttggcttgaccatctttccgtttacaag
tgctccgatggtatcatcgatgctattcagggttccaccgccattaccatttccaactgc
cacttcactgaccacaacgatgtgatgctgtttggagcaagcgacagctacagtgctgat
gagaagatgcaaatcaccgttgctttcacccgcttcggtaaaaatttggtacaaaggatg
cctagggtccgatttggtttcgtccatgttgtgaacaacgattaccgtcattggatcatg
tccgctattggaggcagcagtcaccctacaattatcagccatggcaaccgatttagagcc
ccacgtaacattgcagctaaacaggtttgcaagagggaatatgcaactgagcaagagtgg
aagaactgggattggagatcagagggtgatttgatgttgaacggtgccattttcacacaa
tcaggagacccgaaggccgccaagaaattcggaggctacaagatgatagcgtataagccg
gctcacatggtgccactcctggtgaggtggtcaggaacactcgagtgccgcccaaacaag
ccttgttag
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