Gossypium hirsutum (upland cotton): 107919028
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Entry
107919028 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107919028
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107919028
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107919028
NCBI-ProteinID:
XP_016704057
UniProt:
A0A1U8KNL5
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Position
D13:10944672..10946337
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AA seq
437 aa
AA seq
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MGFAGYSYSWFLLSFFALIPTLRAHIAEYDEYWKARELEAIENLNKAYHPNPEEVVRHYN
DHFVNTMLEYNNTRRVLKGKKNGPCEITNPVDSCWRCDPNWVKNRKRLADCAPGFARGTT
GGKDGKFYVVTDPSDDISNPKPGTLRHAVTQLRPLWITFKKSMIIKLKQELIVTSDKTID
ARGANVHICYGAGITVQFARNVIIHGLHIHHIKPATGGIIRDAENHIGLRTASDGDAISL
FGATNIWLDHLSLYDSSDGLIDVIQGSTAITISNCHFTDHNEVLLFGASDTYVADEKMQI
TVALNRFGKGLVDRMPRCRLGFFHVVNNDYTHWFMYAIGGSSHPTIISQGNRYIASSIYV
TKQVTSRGYLSLEQWNKWNWVSQGDHFMNGAYFITSGDPNASKLFGAEKMMPFQPGRLVP
KLTRYAGTLHCRIGRPC
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgctggttatagttatagttggtttttgttgtcatttttcgccctaatccca
acactaagagctcacatcgctgaatatgatgagtattggaaagcacgagaattggaagcc
attgagaacctgaacaaggcttatcaccccaatccggaggaggtggtccggcattacaat
gaccactttgtcaataccatgcttgagtataataacaccagaagggtgttgaaaggaaag
aaaaatggtccctgtgagattactaaccccgttgatagttgttggcgatgtgatcctaac
tgggtaaagaacaggaagaggttggccgactgtgcccctggatttgctcgtggtactacc
ggtggaaaggacggaaagttttacgtggtcactgaccctagtgatgatatttctaacccc
aagcctggaactttgcgtcatgcagtcactcaactcaggccactttggatcactttcaaa
aaatccatgatcatcaagctgaaacaggagctcatcgttacaagcgacaagaccattgat
gcaaggggagctaatgtgcatatttgctatggtgctggtattactgtccagtttgctagg
aatgtcattatccatggcctccatatccatcacattaaacccgctactggtggcatcatt
agggatgctgaaaaccacattgggttaaggactgccagcgatggagatgcgatctctctg
tttggagcaaccaacatttggcttgaccatctttccctttatgattcctctgatggtctt
atcgatgttatccagggttccactgccattaccatttcaaactgccatttcactgaccac
aacgaggtgctattgtttggagcaagcgacacctacgttgctgacgagaagatgcagatc
actgttgctttgaaccgcttcggtaaaggattggtggacaggatgcctaggtgtcgatta
ggtttttttcatgttgtcaacaatgactacactcattggttcatgtatgccattggtggc
agtagccaccctacaattatcagccagggcaacaggtatatcgcgtcaagcatctacgta
actaagcaagtgactagtaggggctacttatcactggaacagtggaataaatggaactgg
gtatcacagggtgaccacttcatgaacggtgcctattttattacatccggtgatccgaat
gctagcaagctattcggtgctgaaaaaatgatgcctttccaacctggtcgattagtcccc
aaactcacaaggtatgccggaacactccactgcagaattggtcgcccttgttaa
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