Gossypium hirsutum (upland cotton): 107919284
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Entry
107919284 CDS
T04793
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107919284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107919284
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107919284
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
PilO
P116
Dark_CARD
Motif
Other DBs
NCBI-GeneID:
107919284
NCBI-ProteinID:
XP_040965654
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All DBs
Position
D13:complement(40821438..40825208)
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AA seq
958 aa
AA seq
DB search
MEAYWSEVCPPSKRRNNRKEVVVQDPSPIPTKKHSGETQFLYEAPNIDIHRCKQDSRHPA
NISNLDYNDEEEEEYDDDDDDDDEDEDNDDSMEGSHEALPSPSEEDNDESEDLDYCGEEE
EKDVFYINDSTSSGTESKPKSKGKKVGAASASSRKLHLLTVEADAILENVDSDSNKVVEV
ESENNSLPIKFGSWVENTVTPNNADIIDDEMESLWTEMQFCLASDGIASKPSLVEIEDAA
NVFEVKQDRAALCRQGDHYLVLDEEIGIKCKFCSFLQLEIKYVASPFMKHPYGKFRSQYS
GIVDSSMFDGLQDVDPNIDMPGCDSSANVEGTVWEIIPNIKEKLYPHQREGFEFIWNNIA
GGIYRDKSKNSSSEGGGCIISHAPGTGKSLLTIVFLQTYLKENPSCRPVIVAPCSMLLTW
EAELSKWKVDIPFHNMNSPDFCGMGKTNGVALYEKLKVGVPDADRLVRPLVKLLSWKYDG
GILVISYNLFTQLAGKETKRKQKCKNLHKQVSKILLDLPGLLILDEGHIPRNAATLLWKA
LSGIKTNRRIILSGTPFQNNFDELFNTLCLVRPTFAEGIRYSNRYKHNSRRGCKGNEAKR
NFTSWIGSIRNEIGGLREVRAVIKPFVHVYKGTILQTALPGLRHTLVVLRPTELQKKILE
RVEEILKHVQEILERVKEAKNLFKRKREKEKKNALDFDRYVSMISIHPSLLKQLLKQLPD
QKDINEVVSSIVSNEEIERIRLKPEEGVKTRFLMNLLKLSEALEERVIVFSQYLGPLRLI
MEQLEYHLKWKEGEEILFMHGKCDIKQRQCSINVFNDPESKARVLLASIKACSEGINLIG
GSRVVLLDMTWNPSVERQAICRAYRLGQKKVVYVYRLISSVIEGHKFNRQAGKDRVSELL
FSSDEHQEQVCDIVEDKVLEEMLQHGTIKSMFEKIINEPKDSEFIEAFEDQEKVSVPS
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggaagcctactggtccgaggtctgtcctccaagcaagcggaggaacaacaggaaggag
gtggtggtgcaggaccccagccccatacctactaagaaacactccggtgaaacccaattc
ttgtacgaagcacctaacattgacatacaccgctgtaaacaagattccagacaccctgct
aatatttccaatcttgattataatgatgaagaagaagaagaatatgatgatgatgatgat
gatgacgacgaagacgaagacaatgatgattcaatggagggttctcatgaggctctcccc
tctccaagcgaagaagacaatgatgaatccgaggatttggattactgtggggaagaagag
gagaaggacgtcttttatatcaacgattctacatcttccggtaccgagtctaagcctaaa
tctaagggtaaaaaagtgggggcggcctcggcctcctccaggaaactccaccttcttaca
gtagaggcggatgctattttggagaatgtagactcggattcaaataaggtagtcgaagtt
gaatctgagaacaactctttgcctatcaagttcggttcttgggttgagaacacagttact
cctaataatgcagatattattgatgatgaaatggagtcactgtggactgagatgcagttt
tgtcttgcgtctgatgggattgcttcaaagccttccttggtggaaattgaggatgccgct
aatgtttttgaggttaaacaggacagagcagccctatgtcgtcaaggggatcattatctt
gtgctagatgaagaaattggaataaaatgcaaattttgctcctttctgcaactggaaatc
aaatacgttgcttcaccttttatgaaacatccttatggaaaatttaggagccaatattct
ggcattgtggactcctctatgtttgatggtcttcaagatgtagaccctaacattgatatg
cctggttgtgattcctctgccaatgtcgaaggaacagtatgggaaatcattccaaacata
aaggaaaaactttacccccatcagcgtgaaggttttgaattcatttggaataatatagca
gggggaatatatcgtgataagtctaaaaactcgtccagtgaaggtggaggatgcattata
tcacatgctccagggacagggaagagtctactgactattgtctttcttcagacatactta
aaagagaatccaagttgcaggccggtgattgttgctccatgtagtatgttactgacatgg
gaagcagagttaagtaagtggaaggttgatattccctttcacaatatgaacagtccggat
ttttgtggaatgggaaaaacaaatggagttgctctttatgagaaacttaaagttggtgtc
ccggatgcagatagacttgttaggcctttggtgaaactgctttcctggaaatacgatgga
ggcattttggtgatcagttacaaccttttcactcaacttgctggaaaagagacaaagagg
aaacaaaaatgtaaaaatctacataagcaagtcagcaaaatccttctcgaccttcctggc
cttctaatccttgatgaaggacacatacctagaaatgctgctactcttttgtggaaggct
ttgtctggaattaaaaccaatcgccgtatcattctttctggaactcctttccagaataat
tttgatgagctcttcaacacactctgcttagtgagacccacatttgctgaaggaatccgg
tattctaatcgatacaagcataatagtaggcgtgggtgcaaaggaaacgaagcaaagcga
aactttacctcttggattggttccattagaaatgaaatcgggggactgagggaggttaga
gctgtgattaagccttttgttcacgtgtataaaggcacaattctacagactgcacttccc
ggtttgaggcacactctagttgtattacggcccactgaactgcagaagaaaatcctggag
cgcgttgaagaaatcctgaagcatgtacaagaaatcctggagcgtgttaaggaagcaaag
aatctgttcaagagaaaaagagagaaagaaaaaaagaatgcacttgattttgatcgttat
gtgtccatgatctcaatccatccctcattgttgaagcagctgttgaagcagcttccagac
cagaaggatattaatgaagttgtaagctccattgttagcaatgaagagatagaaaggata
agactgaaacctgaggaaggagtgaaaacaagattcctcatgaatctgcttaagcttagt
gaagctctggaggaaagggttatagtttttagtcaatatcttggacctttacggttaata
atggagcagcttgagtatcatttaaaatggaaggaaggggaggagatattgttcatgcac
gggaaatgtgatataaaacagcgtcaatgctccattaatgtgtttaatgatccagagagc
aaagcaagggtgttgcttgcatcaataaaggcttgctctgaaggtataaatcttatcgga
ggttcaagggtggtgttgcttgatatgacgtggaacccatccgtggaaagacaagctata
tgccgcgcatataggttaggccagaaaaaggttgtatacgtttaccgacttatctcatcc
gtgattgaggggcacaaatttaatcgacaagctggcaaggatcgggtatctgagttattg
ttctcttctgatgagcatcaggagcaagtctgtgatattgtagaggataaagttttggaa
gagatgctgcagcatggaacaatcaagtcaatgtttgaaaagatcattaatgagcccaaa
gattctgagttcattgaagcttttgaggatcaagaaaaggtatctgtcccctcgtag
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