Gossypium hirsutum (upland cotton): 107919835
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Entry
107919835 CDS
T04793
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107919835
03460 Fanconi anemia pathway
107919835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107919835
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107919835
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107919835
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
107919835
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
107919835
Bloom's syndrome complex (BTR)
107919835
FA (Fanconi anemia) pathway
107919835
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
RecQ_Zn_bind
HRDC
ResIII
Herpes_UL6
Cob_adeno_trans
PspA_IM30
DUF2205
HHH
TMF_DNA_bd
Motif
Other DBs
NCBI-GeneID:
107919835
NCBI-ProteinID:
XP_040965929
UniProt:
A0ABM3BFU8
LinkDB
All DBs
Position
D13:complement(3642366..3652276)
Genome browser
AA seq
1203 aa
AA seq
DB search
MPDQSNSVESHKCYDKLPKVNWLQHFDAHDKFACQKKFLCTNFLFSLEGQKPQGTMFARL
TSRQIQNSQIFQHTQVEKAWQILSSLPASCRTYLKPGTSAPVKTSTDEISHNRRGRSTLV
EPSGMKWSEHMHVHPNSSETDGKVNGFGRCMTSSFPSNNANTMESGNNLRGNSGITTSMF
SHSNSKVSGGSLKNQTFHGVQQEQSAEVLASEIDDDDLLKDIDVDQIVSEHYQSTCTPQP
SVSKFPPITPSVDKNAFAGQETCLPPELCSNCSHGCKLGHCPEAASHVQEMKDMLIAVSN
ELLDNATNLSSEQIEKLRQDRLQLNKQIQQLEKYISDVERQKSNFSASTATLSFQYGTPQ
TTSLRPNPIQFDTQVHSRNEPNGYDNWNSPTVPFSSVNSFGVPSGPIEREPYIPQIIDVN
YIEGSNDQKWSSRDFPWTRKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGG
KSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMDWSEQQEILRELT
SDYCKYKLLYVTPEKVARSDVLLRHLNILNSRDLLARIVIDEAHCVSQWGHDFRPDYQGL
GILKQKFPKTPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVIPKTKKCV
EDIDKFIKENHFDECGIIYCLSRMDCEKVSEKLQEYGHKAAFYHGNMDPAQRAFIQKQWS
KDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCLLYYSYS
DYIRVKHMISQGAAEQSPLITGHSRFNNSGRILETNTENLLRMVSYCENDVDCRRLLQLL
HFGEKFDSTHCQKTCDNCCKTRSSVDKDVTNIAKQLVELVKLTGQQFSSSHILEVYRGSL
SQFVKKHRHETLSLHGVGKHLAKGEASRIIHHLVVEEYLLEDVKKSDIYGSVSSVLKVNE
SQVKNLFSGRQAIIIRFPSTVKVGKLSKPEVTPAKGSLTTSGKLSPPRVDTPAQSQSVVD
LNLSAKLYSALRMLRTILVKEAGEGVMAYHIFGNATLQHISKRVPRTKEELLEINGIGKA
KILKYGDRLLETIEATIKEHYKTDKINSGSSNDSNDSAKRRRNTNANIDNNDDFSRSTGR
SKRRTVERQDKDGNSDNNHQYPADENDLDFDDLDYVYDVESKENRPQVEVNINGRMLPSW
PRT
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatcaaagcaattcagttgaatctcacaaatgttatgacaaacttcccaaagtc
aattggttgcagcatttcgacgcacatgataagtttgcatgtcaaaagaagtttctgtgt
acgaatttcctattctccctagaagggcaaaaacctcaaggaacaatgtttgcacggtta
acttcccgccagattcagaattcccaaatatttcagcatacgcaagttgaaaaggcttgg
cagattctttctagccttccagcatcttgcaggacctacttaaaaccaggaacaagtgct
ccagttaagacttcaacagatgagatttcacataatcggagaggaagatctacccttgta
gagccatcaggcatgaagtggtctgaacatatgcatgtgcatccaaacagcagtgaaact
gatggcaaggtcaatggatttggaaggtgcatgaccagttcttttccatcaaataatgcc
aataccatggaaagcggaaataatttacgagggaacagtgggattacaacatcgatgttc
agccatagcaattctaaagtttctggcggatcattaaagaatcaaactttccatggtgtc
caacaggagcagtctgcagaggttttggctagtgaaattgatgatgatgacttactgaag
gatattgatgtggatcagattgtctcagaacattatcagtcaacttgtacacctcaacct
tcagtttctaaatttccgcctattaccccaagtgtcgataaaaatgcttttgcaggacaa
gaaacttgtttgcctcctgaattatgctcaaactgcagtcatgggtgtaagttaggacac
tgcccagaagcagcaagtcatgtacaggaaatgaaagacatgttaattgccgtgtctaat
gaattacttgacaatgctaccaacctgagttccgagcagatagagaagcttcgccaagat
aggttgcagctaaataagcaaattcagcagcttgagaaatatatctctgatgtggaaagg
caaaagtcaaatttttcggcatctacagcaactctcagcttccaatatggaacaccacaa
acaacatcattacgccctaacccaattcagtttgatacccaggttcattcccgtaatgaa
ccaaatgggtatgacaattggaattcaccaacagttcctttctcttctgtaaatagtttt
ggtgttccatcaggtcctattgaaagagaaccatacattccacagattattgacgtaaat
tatattgaaggctcaaatgaccaaaagtggagtagtagagattttccatggactagaaag
ctggaggcaaataacaagaaggtgtttggaaaccactcgtttcgccccaaccaaagagag
gttattaatgccacaatgagtgggtatgatgtttttgttcttatgcctacaggagggggg
aagagcctgacgtatcagctgcctgctcttatctgtccaggaataacattggtgatttct
cccctagtttcactcatccaagatcaaataatgcatttgttgcaggcaaatatacctgct
gcttacttgagtgccaatatggattggagtgaacaacaggagatccttagagagcttact
tctgattattgtaaatacaagttgttatacgttacaccagagaaagtggctaggagtgat
gtcctcttgcggcatctgaacattctaaattcacgtgacttgcttgcaaggattgtgatt
gatgaagctcattgtgtgagtcagtgggggcatgactttagaccggattatcagggcctt
ggtatattgaaacagaagtttccaaagactccagttttagctttaactgctactgcaaca
gccagtgtaaaagaagatgttgtgcaagctcttggtctcattaactgcatcatattcagg
caaagttttaatcgcccaaatttatggtattctgttatccccaaaaccaagaaatgtgtg
gaagatatcgataagttcatcaaagaaaaccattttgatgaatgtggaattatttattgt
ctttctagaatggattgtgaaaaagtttcggagaagttgcaggaatatgggcataaggca
gcattttaccatggtaatatggatcctgcacaacgtgcctttattcaaaagcagtggagc
aaagatgaaatcaacataatttgtgctacagtggcatttggaatgggtatcaacaaacca
gatgttcgctttgtcattcatcattctcttccaaaatcaattgaaggttaccatcaggag
tgtggtcgtgctggtcgagatggtcaacgctcatcttgcttattgtattatagctacagc
gattatatacgagtcaagcatatgattagtcaaggagctgcagagcaaagccccttgatt
actggacatagtcgctttaataattcagggaggatattggaaacaaatactgaaaatctc
ctacgcatggtcagttattgtgaaaatgatgttgattgcagacgtcttttacagcttctt
cattttggagaaaaattcgattccacacactgccaaaaaacttgtgataattgttgcaag
actagaagttctgttgataaggatgtcacaaatatagcaaaacaactggttgaacttgta
aaattaacaggccagcagttttcatcatcgcatattttagaagtctacagaggttcctta
agccaatttgtcaaaaaacatagacatgagactttgagcctgcacggtgtgggaaaacat
ctagccaaaggtgaagcttcccgcataatacatcatctcgttgttgaggagtaccttttg
gaagacgttaaaaagagtgatatttatggatctgtgtcatcagtgctgaaggtgaatgaa
tcccaggttaaaaatctcttctctggcaggcaggcaatcataataagattccctagcact
gtaaaagtaggtaaactgagcaaaccagaagtgactccagcaaaaggctcattgaccaca
tcagggaagctaagtcctccaagagttgacactccggcccaatctcagtccgtagttgac
ttgaatctgtctgcaaaactgtattctgctttgcgaatgcttcgaaccattctcgttaaa
gaagctggtgaaggggtcatggcataccacatttttggaaatgctaccctacagcacata
agcaaaagggttccaagaacaaaggaagaactcctcgagatcaatggcattgggaaggct
aagatactcaaatacggagatcggttgttggaaaccattgaagctaccatcaaggaacac
tacaaaacagacaaaatcaatagtggcagcagcaatgacagtaatgattctgcaaagagg
agaagaaacacaaacgcaaacatagacaacaatgacgacttcagtagaagcactggtcgg
tccaagagaaggacagtggaaaggcaggacaaagatggtaacagtgataataatcatcaa
taccctgctgatgagaatgacctggattttgatgaccttgattatgtatatgacgttgaa
tcgaaagagaaccgcccgcaggtagaggtcaatataaatggaaggatgctaccttcttgg
cctagaacatga
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integrated database retrieval system
