Gossypium hirsutum (upland cotton): 107920023
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Entry
107920023 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107920023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107920023
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107920023
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107920023
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
107920023
NCBI-ProteinID:
XP_016704995
UniProt:
A0A1U8KRD2
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Position
D13:37308090..37316527
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AA seq
883 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKISASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFDDVDELYSSLPLDKVES
LEDLVAIGPLSKGGPILKTSLAASSQLPQGGSSQEHVEDTASQDGNSDIAKTPPPKSSTI
NSSAAATPAGSHVTPAPLNLPPHSLSGASSPSVLPDSNSAQGLLESTGTTNPPSPVNLSN
ATKEEDITNFPGRRPSPSLADAGVRGIGRGLSGQPSSTIPLVSGSVASGNGALGAVPPAS
DMAKRNILGVDERLGNSSMGQSLTSPISNRMILPQAAKANDGSAPVDSSNPNESAGLPGR
AFSPSMVSGMQWRPGSSFQNQNELFRGRTEIAPDIREKFXQRFQQVQQQGHSNLLSSMSP
LAGGNHNQFSAQQQSPLMQQFNPQSSCFSIPPGLGHGGQAPGLNSVTSASLQQQPNSIHQ
QSGQQALATSVPKDADVGVAKVEEQLQSLPDGSSSEAIPTSGLAKNLMNEDDLKAPYAID
SPAAVSGSLTEPARNIRDIDLSPGQPLQYNQSSSGLGVIGRRSVSDLGAIGDSLSGSTNS
GGMHDQLYNMQMLEAAYYKIPQPKDSERARSYTPKHPAATPASYPQVQAPIVNNPAFWER
ISMDGYGTGTDTLFVAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIATDE
FEQGTYVYFDFHVANDDHQHGWCQRIKTEFIFEYNYLEDELIV
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgcaagctacaaggagagatcgatcgtgttctcaagaaagtccaagaa
ggtgtcgatgtgttcgatagcatctggaacaaggtttatgatacggataatgcgaatcag
aaggagaaatttgaggctgacttgaagaaggaaatcaagaagctgcaaaggtacagggac
cagatcaagacttggattcaatcgagcgagatcaaggataagaaaattagtgcctcgtat
gagcaggccctggtggatgctcggaagcaaattgagcgtgaaatggaaagatttaagatc
tgtgagaaggagactaagacaaaagcattttctaaagaaggcttgggccaacaacccaaa
actgatccgaaggagaaggctaagtcagagacaagggattggttgaacaatgtggttgga
gagttagaatcccagattgatagttttgaagctgagattgaggggctgtctgtgaagaaa
ggaaagacgagaccacctagactgacacacttggagacgtcaattacacgacacaaagct
catataatgaagttagaattgattttgagactattggacaatgatgaattgagtccagag
caagtcaatgacgtgaaagacttcttggatgattatgtggaacgtaatcaggaggacttt
gatgaatttgatgatgttgatgagctctacagctcattacctctagacaaggtggagtct
cttgaagatctagttgcaattggcccactttccaagggtggtccaatcttgaagacatct
ttggcagcatcgtctcaattgcctcagggtggttcctcccaggagcatgttgaagataca
gcttcccaggatggtaattctgatatagcaaagaccccacctccaaaaagtagtacaatt
aattcttctgctgcagcaacgccagctgggagccatgtaacccctgctccactgaatctt
ccaccacatagtttgtctggtgcttcatctccttcagttcttccagattcaaattctgcc
caaggcctcttggaaagcactggcaccaccaatcctccttctcctgtaaatttgtctaat
gctacaaaggaagaagatatcacaaacttccctggccgtaggccatctccatcccttgct
gatgctggagtacgaggcattggtagaggtctatccggtcagccttcatctactataccc
cttgtttctggaagtgtggcttctggtaacggagcccttggtgctgtccctcctgcctct
gacatggcaaaaagaaatattttgggagttgatgagagacttgggaatagtagcatgggg
caatctttgacatcacctattagtaacagaatgatcttgcctcaggcagccaaggcaaat
gatggaagtgcacctgttgattctagtaatcctaatgagtctgctggactacctggcaga
gcattttctccttcaatggtttctggcatgcagtggaggcctggaagttcgtttcagaat
caaaatgagctgtttcgtggaagaactgagatagctcctgatataagggaaaagtttntg
caacggttccagcaagtgcagcagcaaggccatagcaacctgcttagcagcatgtctcct
cttgctggaggaaatcataatcagttttctgcacaacaacaaagccctctcatgcagcag
ttcaatcctcaaagctcgtgtttctctatcccacctggtctgggacatggtggccaagca
cctggtcttaatagtgttacctctgcaagcttacagcagcaaccaaactcaatccaccag
cagtctggtcagcaggcattggcaacaagtgttccgaaggatgctgatgttggcgttgca
aaagttgaggaacaactgcagagtttacctgatggttcaagttctgaagctattccaact
tctgggcttgccaaaaatctcatgaatgaagatgatttgaaagctccatatgcaattgat
tctcctgctgctgtctcaggctctttgacggaacctgctcgaaatattagggatattgat
ctttctcctggacaacccttacaatataaccaatcttctagtggtcttggtgttattggc
cggagaagtgtttccgatcttggtgccattggtgacagcctcagtgggtcaacaaattct
ggaggaatgcatgatcaattatacaatatgcagatgcttgaggctgcatattacaaaatt
ccccaaccgaaagactcagaacgagcgaggagctacactccaaagcaccctgcggcaaca
cctgctagttaccctcaagttcaggcacccatagtgaataatcctgccttctgggaacgc
ataagcatggatggatatggcactggcactgatacactgtttgttgcattttattatcaa
cagaacacttatcaacaatatctagctgcaaaggagctgaagaagcaatcttggagatac
catagaaaatacaacacatggtttcagcggcatgaggaaccaaaaattgctactgatgaa
tttgaacagggaacctatgtatactttgattttcacgtggcaaatgatgaccaccaacat
ggatggtgtcagagaatcaagactgagttcatctttgagtataactatctggaagatgaa
cttatagtatag
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