Gossypium hirsutum (upland cotton): 107920099
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Entry
107920099 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
107920099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107920099
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107920099
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
107920099
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
107920099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_30
DUF3371
Motif
Other DBs
NCBI-GeneID:
107920099
NCBI-ProteinID:
XP_040954641
UniProt:
A0A1U8KWG2
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Position
D08:complement(62361552..62367465)
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AA seq
1224 aa
AA seq
DB search
MEEEEDRILLSSLGVTSANPEDIERDVLAKAENNALDGSEVGGSTEEEPADKLEGNNPSS
SANQVKLLNKLRAVEFEIDAVASTVEERKDVTSGDHDAKDEHVEEGNREDDDESAMQLHS
RDSTLQRALATDRLKSLKNTKAQLEKELSGLLKESSSEGVKHDKLIKDLVKEEPRLKRKS
KEIQKPSKTKQKRKKSVSFNDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFE
RRLQQPGTSNEHSVPYEEDEKDDIVSASVARVAKSISEAAQVRPSTKLLEPDALPKLDAP
AFPFQRLKKSLKFSQSKEVEENKGSKRKKKRPLPDKKWRKRISREERDMEVGEDVRDNLT
SHDEEEDQEGSEDMDDNDPAYVTLEGGLKIPETIFSKLFDYQKVGVQWMWELHCQRAGGI
IGDEMGLGKTVQVLSFLGALHFSNMYEPSIVVCPVTLLRQWKREARRWYPKFHVEILHDS
AQDPAYKKNQAKSNEESDYESEGSVDSDYEGNLSSKSSKKWDSLINRVLRSKSGLLITTY
EQLRVIGEKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSEL
WSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLVMPYLLRR
MKADVNAHLPKKAEHVLFCSLTAEQRSVYRAFLASSDVEQILDGGRNSLYGIDVMRKICN
HPDLLEREHSCQNTDYGNPERSGKMKVVAQVLQVWKDQGHRVLLFAQTQQMLDILENFLT
TSGYCYRRMDGHTPVKQRMALIDEFNNSDDIFIFILTTKVGGLGTNLTGANRVIIFDPDW
NPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFF
KARDMKDLFVLNDGENGSTETSNIFSQLSEDVNIVVMQKDKQHKQEHSRAAGSHSDHGGG
RNGNSSNGSHSKRKGKEKDDHSDGEVDEEKNILRSLFDAQGIHSAVNHDAIVNANDEEKV
RLEEQASQVAQRAAEALRQSRMLRSHDSISVPTWTGKSGAAGAPSAVRKKFGSALNTQLV
KPSGESSSTGIAAGAAAGKALSSAELLARICGNQEQAIGAGLEHQFGSVSSSSNTTRPSI
NRTSRSWSSSNVSSVQPEVLIRQICTFIQQKGGSTDSASIVDHFKDRIPSNNLPLFKNLL
KEIAKLEKDPNGSRWVLKPEYRQQ
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaggaggataggatattgttgagtagtttaggtgttacgtccgcaaatcct
gaggatatcgaacgggatgtattagccaaggcggaaaacaatgctttggatggtagtgaa
gtaggagggagcactgaggaggaaccggccgataagttggaagggaacaacccatcgtcg
tcggccaaccaggtgaaactcttgaataaattgagggctgtggaattcgaaattgatgct
gttgcatccactgttgaagaaaggaaagatgtcacaagtggtgaccatgatgcgaaggat
gagcatgtggaggaagggaatagagaggatgatgatgaaagtgctatgcagttacattcg
cgtgattcgacccttcaacgtgccttagctactgataggctaaagagtctcaaaaacact
aaggctcaacttgagaaagaactgtcggggttactcaaagaaagttcgtccgagggtgta
aagcatgacaagttgataaaagacctggtgaaggaagagcctaggctgaaaaggaagtca
aaagaaatccaaaagcctagcaaaactaaacaaaagcggaagaaatcagtttcttttaat
gatgatgttgattttgatgcagtgttggatgcagcatctgcaggatttgtggaaactgaa
agggatgaactggtgcggaagggaatattaaccccttttcataagcttaagggatttgag
cgccgtcttcaacagcctggtacatcaaatgagcacagtgttccttatgaagaagatgag
aaagatgatattgtttctgctagtgttgctagagttgcaaagtcgatatcagaggctgca
caagttcgcccatcaacaaaactacttgagcctgatgctttgcctaagcttgatgcaccc
gcctttccttttcaaaggctaaaaaagtctttaaagttttctcagtcaaaagaagtagag
gagaataaaggctcaaaacggaaaaagaagaggcctttgcctgacaagaaatggagaaag
cggatctctcgtgaggaaagagatatggaagtgggagaagatgtgagggataacttgact
tcccatgatgaagaggaagaccaagagggctcggaggatatggatgataatgaccctgct
tatgtaacacttgaaggcgggctaaaaatccctgaaaccatttttagcaagctttttgac
tatcagaaagtgggagtacagtggatgtgggaactacattgtcaaagagcaggtgggatc
attggggatgaaatgggtcttggcaagactgtccaggtcttgtcttttcttggagctttg
cacttcagtaacatgtatgagccaagcattgttgtctgccctgtaacactcttacgacaa
tggaaaagggaggcacgtagatggtatccaaaatttcatgtcgagatactacatgattct
gctcaagatcctgcttacaagaagaatcaagccaaatctaatgaagaaagtgactatgaa
agtgaaggatcagtggacagcgactatgaagggaacttgtcttctaaaagcagcaaaaaa
tgggattctttgataaatagagttttgcggtcaaaatctgggttgttgattacaacttat
gagcaactccgagtgataggggaaaagttgcttgacatagaatggggttatgcagttttg
gatgaaggacatcgaatccgaaatccaaatgctgaaatcactctggtttgtaaacagctt
caaacagttcaccgtataataatgaccggtgcaccaattcagaacaagcttagtgaacta
tggtcattatttgattttgttttccctgggaagttgggtgttttacctgtatttgaggca
gagtttgcagtccctatatctgttggtggatatgccaatgcttcaccattacaggtatca
acagcctacagatgtgctgttgtcctccgtgatttggtcatgccatatctactccggcgc
atgaaggctgatgtgaatgcccatctgcctaaaaaggcagaacatgtacttttttgtagc
cttactgccgaacaaagatctgtctatagagcatttcttgctagctcagatgtggaacaa
atactggatgggggtagaaattctctttatggaattgatgtgatgcgtaagatctgtaac
catcctgatctgcttgagagagaacattcctgccagaatacagattacggaaatcctgaa
cggagtgggaaaatgaaagtggttgcccaagttctccaggtttggaaggatcagggccat
cgtgtccttttgtttgctcaaacacagcaaatgcttgacattcttgaaaacttcttgact
acaagtggctattgctatcgacgaatggatggacatactcccgtaaaacagagaatggct
ttaatagatgaattcaacaactccgatgatatatttattttcattttgactacgaaagta
ggtggtttaggaacaaatttaactggagctaacagggtgatcatctttgaccctgattgg
aacccgtcaacggacatgcaggcaagggagcgtgcttggcgtattggtcagaaaagagac
gtaactgtttatagattgattactcgtggaacaatcgaagagaaggtgtaccatcggcag
atttacaaacattttcttaccaataagatactgaagaaccctcagcagagaagattcttt
aaagctcgagacatgaaggatcttttcgttctgaatgatggagagaatgggtcgaccgaa
acatctaatattttcagtcagttgtcagaagatgtaaatatcgttgttatgcagaaagat
aagcagcataagcaggaacattcgagagcagctggttctcattctgatcatggtggtggt
agaaacggcaatagctcaaacggcagtcattcaaagaggaaaggaaaagaaaaagatgat
catagtgatggtgaagtagatgaagaaaaaaatattttgaggagcctttttgatgcccaa
ggaatacatagtgctgtgaaccatgatgccatagtgaatgccaatgatgaagagaaggtg
aggcttgaggaacaggcttcacaagtggcacaaagagcagcggaagcattacgacaatca
cgaatgcttcgaagccatgatagtatttccgttcctacttggaccgggaaatctggagct
gccggtgcaccgtcagcagttcgaaagaaattcggctcagctttgaacactcagttagta
aaaccctcaggtgagtcatctagtaccggcatagcagctggggccgctgctggcaaggca
ttatcttcagcagaattgctagctcgaatctgcggaaaccaagaacaagccattggtgct
ggacttgaacatcagtttggatcggtttcaagttcgtcgaacaccacaagaccctccatt
aacaggacttctaggtcctggtcatcttctaatgtatccagcgtgcagcctgaggtacta
atacgtcagatatgtacattcatacaacaaaaaggcggcagcacggattcagccagcatc
gtggatcatttcaaggaccgaataccatcaaacaatctgcctttgtttaagaatctattg
aaggaaattgctaaactagaaaaagatccgaacggatcacgttgggttctaaagccagag
tatcggcagcaataa
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