Gossypium hirsutum (upland cotton): 107920252
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Entry
107920252 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107920252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107920252
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107920252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
107920252
NCBI-ProteinID:
XP_016705349
UniProt:
A0A1U8KX64
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All DBs
Position
D13:complement(32786895..32793220)
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AA seq
928 aa
AA seq
DB search
MNINNYPIAMESLSEPSKDAQSLQTLASGTFSSSLSSLSSSSRTLPSNQDFHFFKNFDGF
KLPIDQIAKISDSLLESIGSSAKTWCANKAINFPDRIGSIADDEAYDWLVDINDEILERF
DVSVDEFQNIRKKEEETGRFIGSDPEINGFQLVYEKKKKKGDGGLMGDSVAESVSGKEGA
SPSYSGVKVKKWALAAGTSGKAKVPFHIPTIRKPQEEYNILVNNSNKPFEHVWLQRSEDG
QRFVHPLEKLSVMDFVDKDIADIEPVKPPSIESTPFKLVEEVKDLKELAAKLRSVNEFAV
DLEHNQYRSFQGLTCLIQISTRNENFVVDTLKLRIHIGPYLRELFKDPTKKKVMHGADRD
IVWLQRDFGIYICNLFDTGQASRVLKMERNSLEHLLQHFSGVTANKEYQSADWRLRPLPA
EMVRYAREDTHFLLYIYDLMRIKLLSMPMEPEHFDAPLVEVYKRSSDVCMQLYEKELLTE
NSYLHIYGLQAACLNAEQLSIVSGLYEWRDHIARSEDESTGYVLPNKILIEIAKQMPVTA
GKLRRLLKSRLPYVERNLGAVVSIIKRSMQNAVSFEAAAQQLKMGRVLHASEECVAVNDG
AVLVPPETCPDLKIGNDRTEIIDGGMGGLDGKTAKLASPPCKELVKTGSSIPGPDTDKKQ
KRCHMEPVVNSISMSTREGLTDSGLSPPSTKAGGATVQILKRPNCGFGAFLGNSATKKKS
DIGKKEENKLEQIRSSVNLPFHSFLGIEEQSKLVTEEATKVSQISQPEEPPPVVATELTS
EDIIMLEENSSKDESNDGGGGPKPSDASVGDSPVCYTSETNEGDNEETMSLTDLSTSFQQ
STQSFKVKESKEQSGSLQIKPFDYEAARKQVKFGVDXQEKPGSQVNSARKKKNSAVGLLQ
IDDGTKLFPQARRRQAFPASGNRSATFP
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcaacaattatccaattgcaatggaatccctgtctgaaccttcaaaagatgcc
caatctcttcaaaccctagcttcgggtactttctcttcttctctttcctcactgtcttcc
tcatctcgaaccctcccttccaatcaagactttcatttctttaagaatttcgacggtttc
aagctccccattgatcaaattgccaagatatcggattctttgcttgaatccatcggctca
tcggctaaaacatggtgcgccaataaagcgatcaattttcctgacagaattgggagtata
gccgatgatgaagcttatgattggcttgttgatatcaacgacgaaatcttggaacgattt
gacgtttccgtggatgaatttcaaaatatccgaaagaaagaagaggaaacggggaggttt
atcgggtcggatccggaaattaatgggtttcaattggtttacgagaagaaaaagaagaaa
ggggatggtgggttaatgggtgactcggttgctgagtcagtgagtgggaaggaaggtgcg
tctccgagttattctggagtgaaggtgaagaaatgggcgttggctgcagggacgtcgggg
aaagcgaaggttccttttcatataccaacaatacggaagccgcaggaagagtataatata
cttgtgaataattcgaataagcctttcgaacatgtttggttgcaaaggagtgaggatggg
caacgctttgttcatccactggagaagctgtctgttatggattttgtggataaagatata
gcagatattgagcctgtaaaaccaccctcaattgagtctaccccattcaagctggtggag
gaggtaaaagatttgaaggagttggcagccaaattacgcagtgtaaatgaatttgcggtt
gatttggagcataaccaatatagatcatttcaaggattgacttgtttgatacaaatttct
accagaaatgagaattttgttgtcgatactttgaagctacgaattcatattggcccgtat
cttagggaattattcaaggatcccaccaagaaaaaggttatgcatggggcagaccgggat
attgtgtggcttcagcgggactttggcatatatatatgcaacctctttgacaccggacag
gcctcgagggtcttgaaaatggaaagaaatagtttggaacatcttctgcaacactttagt
ggagttactgctaacaaagaatatcaaagtgcagattggagattgcgtcctcttcctgct
gaaatggtcagatatgctagagaagacacacactttttactgtacatttatgatttaatg
agaatcaaattgctatccatgcctatggaacctgaacattttgatgctccgttggtagag
gtctacaagagaagttctgatgtatgcatgcaactatacgagaaagagctgctgacagag
aattcatatctccacatatacgggttgcaggctgcttgtttgaatgctgagcagctatca
attgtctctgggctttatgaatggcgagaccatattgcacgttcagaggatgaaagtact
ggctatgtattgcctaacaaaatacttattgaaattgccaagcagatgcctgtaactgct
ggcaagttgcgtcgactgttgaaatctagactcccatatgtggagcgaaatcttggtgca
gttgttagcatcatcaagcgttctatgcagaatgctgtctcatttgaagctgctgctcaa
caacttaaaatggggcgtgtgctacacgcatcggaagaatgtgtagcagttaatgacgga
gctgtacttgtacctcctgagacttgtccagacttgaaaattggaaatgatagaacagaa
atcatagatggtggcatggggggacttgatgggaaaactgcaaagcttgcttctcctcca
tgtaaagaattagtgaagactggaagcagtattcctggacctgacacggacaaaaaacaa
aaaagatgccatatggagccagttgtgaacagtatctcaatgtctacgagagaaggtctt
accgattcagggctgagtccaccttcgacaaaggctggtggagcaactgttcagattctg
aagagacctaactgtggctttggggcatttctggggaattctgccacgaagaaaaaatct
gatataggtaaaaaggaagagaacaagttggagcagatcagatcttcggtgaatctaccg
ttccactcatttttgggtatagaggagcagtcaaaactggtgacggaggaggcaactaaa
gtatcacaaatttcacaacctgaagaacctcctcctgtggtagctaccgagttgacatct
gaagatataataatgttggaagaaaattcaagtaaagatgaatcaaatgatggtggtggt
ggcccaaaacccagtgatgcttctgtcggtgatagtcccgtttgttacacctcggaaaca
aatgaaggtgacaatgaggagactatgtccctaactgatttatctacaagcttccaacaa
tccacccagtcttttaaagtcaaggaatcaaaagaacagagtggttctttgcaaataaag
ccatttgattatgaggcagccaggaaacaggttaaatttggagtagacnnacaggaaaaa
ccaggaagtcaagtaaactctgcccgtaagaagaaaaattctgcagtcgggctgctgcaa
atagatgatgggacgaagctgttcccgcaggctagacgacgacaagcttttcctgcatca
gggaataggagtgcaactttcccgtga
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