KEGG   Gossypium hirsutum (upland cotton): 107920261
Entry
107920261         CDS       T04793                                 
Name
(RefSeq) WD repeat-containing protein 48
  KO
K15361  WD repeat-containing protein 48
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    107920261
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107920261
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     107920261
SSDB
Motif
Pfam: WD40 WD40_Prp19 DUF3337 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WD40_RFWD3 RAWUL Beta-prop_IP5PC_F Beta-prop_DCAF12 WDR90_beta-prop_4th Beta-prop_Nup120_160 VWA_3_C
Other DBs
NCBI-GeneID: 107920261
NCBI-ProteinID: XP_016705364
UniProt: A0A1U8KSC8
LinkDB
Position
D13:57638688..57647215
AA seq 763 aa
MHRVGSAGNNSNSSRPRKEKRLTYVLNDSDDTKHSAGINCLAVLKSSVSDGCNYLFTGSR
DGTLKRWALAEDAATCSATFESHVDWVNDTVIAGENTLVSCSSDTTLKIWNCLSDGTCTR
TLRQHSDYVTCLAAAERNANVVASGGLGGEVFVWDIEAAVTPLSKSSDVMEDDCSNGING
SANSLPVSSLRPISSNNSITAHTTQCPGYVPIAAKGHKESVYALAMNDNGSLLVSGGTEK
VVRVWDPRTGSKTMKLRGHTDNVRALLLDSTGRYCLSGSSDSMIRLWDLGQQRCVHSYAV
HTDSVWALASTPTFTRVYSGGRDLSLYLTDLTTRESLLLCTKEHPVLQLALHDDSIWVAT
TDSSVHRWPAEGRNPQKVFQRGGSFLAGNLSFSRARVSLEGSTPAAVYKEPIFSIPGTPA
IVQHEILNNRRHVLTKDSAGLVKLWEITRGVVVEDYGQVSFDEKKQQLFEMVSIPAWFTV
DTRLGSLSVHLDTPQCFSAEMYSVDLNITGKPEDDKVNLARETLKGLLAHWMTKRRQRLG
SQASANGDVLSGKDNTARSLAHSRIEVDGNAENDSMVHPPFEFSTVSPPSIISEGSQGGP
WRKKITELDGTEDEKDFPWWVLDCVLNNRLPPRENTKCSFYLHPCEGTAVQILTQGKLSA
PRILRINKVVNYVVEKMVLDKPIDTGSTDGSLAPGHGGQLQHSAVADGSFKSGLKPWPKP
RPSVEILCNNQVLSTDMSLATVRAYIWKKPEDLVLNYRVVQGR
NT seq 2292 nt   +upstreamnt  +downstreamnt
atgcatcgagttggcagtgctgggaacaattccaattctagccgcccacgtaaagaaaag
aggctgacatatgtattaaatgactctgatgacacaaagcattctgctggtataaattgt
ttggctgtgctaaagtcatctgtctctgatgggtgcaactatctcttcactggaagccgt
gatggcacgcttaagagatgggcactggctgaagatgctgccacttgctctgctacattt
gagtcacatgttgattgggtaaatgatactgtaattgctggtgaaaatacacttgtttca
tgctcgtcagacaccacattgaagatatggaattgcttgtctgatgggacttgtaccagg
actcttcgtcaacactctgactatgttacatgtctagctgctgctgaaagaaatgcaaat
gtggttgcctctgggggtcttggtggggaggtttttgtatgggatattgaagctgcggtt
actccactctcaaagtccagtgatgtaatggaagatgattgttccaatggtatcaatggt
tctgcaaattcattacccgtatccagtctgcgaccaattagctcgaataacagtattact
gctcacacaactcaatgtcctggatatgtccccatcgctgccaaaggccataaagagtca
gtctatgcattggcaatgaatgataatggatcccttcttgtctctggtggaactgagaag
gttgtgcgtgtttgggacccaagaacaggttcaaagactatgaagttaagagggcataca
gataacgttagggctctccttctggattctactggcaggtattgtttatcagggtcctct
gattctatgatcaggctatgggaccttggtcagcagcgttgtgtgcattcatatgctgtg
catacagattctgtttgggcacttgcgagcaccccaacatttactcgtgtttatagtggt
ggtagagatctttctttgtatttgacagacttgacaacaagagagagtcttttgctttgc
acaaaggaacacccagttttgcagttggcgttgcatgatgatagtatctgggttgcaacg
acagattcttcagttcatagatggcctgctgaaggaagaaatcctcagaaggtctttcaa
agaggtggttcattcttggctggaaacttgtctttttcaagggcaagagtttccttagaa
gggtctacccctgctgctgtttataaagaaccaatcttttccattcctggaactccagca
atagttcagcatgaaattttaaataacagaaggcatgtattgactaaggatagtgctggt
ttggtaaagctctgggagataaccaggggtgttgtggtcgaggactatggacaggtttca
tttgacgagaaaaagcagcagttgtttgagatggtaagcattccagcatggttcactgtg
gatacccggcttggaagcttgtctgttcatttggacacaccccaatgcttttctgcggag
atgtattctgttgatctaaacataactgggaagcctgaggatgataaggttaatctagct
cgtgaaactcttaaaggtctgttggctcattggatgaccaaaagaaggcaaagacttggc
tcccaagcttccgctaatggagatgttttatcaggaaaggataatactgcaagaagtctt
gctcattcaagaattgaggtagatggaaatgctgaaaatgactccatggtccatcctcct
tttgagttttctacggtttcccctccgtcaattatctctgagggttcccaaggaggtcct
tggagaaagaaaattactgaattggatggaactgaggatgagaaagacttcccttggtgg
gttttggattgtgttttaaacaaccggctaccaccacgagaaaacaccaagtgcagcttc
taccttcatccatgcgaaggtacagctgttcagatcctcacacaagggaagttaagtgca
cctcgtatattgagaataaataaggttgttaattatgtcgtagaaaagatggtgcttgac
aaaccaattgatactggaagtaccgatgggtcacttgctcctggacatggaggacaattg
cagcattcagctgtcgctgatggttcttttaaatctggattgaagccttggccgaagcct
aggccttctgttgagattttatgcaataatcaggtcttatctacagacatgagcttagcc
actgtgcgggcctacatatggaagaaacctgaggatttggtacttaattacagagtggtt
caaggcaggtga

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