Gossypium hirsutum (upland cotton): 107920423
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Entry
107920423 CDS
T04793
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107920423
09122 Translation
03013 Nucleocytoplasmic transport
107920423
03015 mRNA surveillance pathway
107920423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107920423
03041 Spliceosome [BR:
ghi03041
]
107920423
03009 Ribosome biogenesis [BR:
ghi03009
]
107920423
03012 Translation factors [BR:
ghi03012
]
107920423
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107920423
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107920423
mRNA cycle factors
Stress granule specific factors
107920423
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107920423
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107920423
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
eIF-4
107920423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-GeneID:
107920423
NCBI-ProteinID:
XP_040966135
LinkDB
All DBs
Position
D13:complement(9047704..9051107)
Genome browser
AA seq
406 aa
AA seq
DB search
MSAAAATSRATRRMGAEDEKLVFETTEGIEPILSFDQMGLKDDLLRGIYNYGFEKPSAIQ
QRAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEKV
IRTIGDFMNIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLI
LDESDEMLSRGFKDQIYDVYRHLPPELQVCLISATLPHEILEMTSKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVS
SMHGDMPQKERDAIMSEFRDGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggcggcggcgacgagccgagcgactcgacggatgggagccgaggatgagaag
ctagtgttcgaaacgacggaaggaatcgagccgatattgagtttcgatcagatgggacta
aaagacgatctcctccgtggaatctacaattacggcttcgaaaagccatctgctatccag
cagagagccgtcatgccgataatcaatggccgcgacgtcattgcccaagctcagtctggt
accggtaaaacctccatgattgccctcaccgtttgccaagtggttgacacagctagcaga
gaggttcaagcattgatcttgtcacccacgagggaactggcttcacaaacggagaaagtg
atacggacaattggtgatttcatgaacatacaagcgcacgcatgtattggaggcaaaagt
gtgggtgaagatataagaaagctagaaaatggagttcatgtagtgtcgggaacacctggt
agagtttgtgatatgatcaaacgaagaaccctacgtacaagggctattaaactattgatt
cttgatgaatctgatgagatgttgagccgagggttcaaagatcaaatttatgatgtttac
cgacatcttccaccagaacttcaggtttgtttgatatctgctaccctccctcatgaaata
ttggaaatgacgagcaaatttatgactgatcctataaggatcctcgtgaagcgtgatgaa
ttgactctggagggaattaagcagttttttgtagcagttgaaagggaagagtggaagttt
gatacactatgtgatctttacgacacgttgacaatcactcaagctgttattttctgcaat
acaaaacgaaaggtcgattggctaactgagaagatgcgtagcaataactttacggtatcc
tcaatgcatggagatatgcctcagaaggaaagagatgcgattatgtctgagtttcgggat
ggtgcaacccgtgttcttatcactacagatgtttgggccaggggacttgatgttcagcag
gtgtctctggtgatcaattatgacctgccaaacaatcgagagctttacatccataggatt
ggacgttctggtcgattcggacgaaagggtgttgctattaatttcgtgaaaagtgacgac
atcaagattcttagagacatagagcagtactacagtacccagatcgacgaaatgccaatg
aatgtcgcggatctgatatga
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