Gossypium hirsutum (upland cotton): 107920497
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Entry
107920497 CDS
T04793
Name
(RefSeq) ubiquitin receptor RAD23c
KO
K10839
UV excision repair protein RAD23
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107920497
09124 Replication and repair
03420 Nucleotide excision repair
107920497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ghi03051
]
107920497
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107920497
Proteasome [BR:
ghi03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
107920497
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
107920497
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
UBA_Ucp12
UBA_RAD5A
UBA_3
Rad60-SLD_2
TECR_N
Dsc3_N
Ubiquitin_4
Crinkler
Motif
Other DBs
NCBI-GeneID:
107920497
NCBI-ProteinID:
XP_016705726
UniProt:
A0A1U8KTF2
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Position
D13:10367878..10372956
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AA seq
384 aa
AA seq
DB search
MKVSVKTLKGTHFDIEVKPEDAVADVKKNIETVQGADVYPAAQQMLIYKGKVLKDDTTLA
ESSVTENSFIVIMLTKNKVASGEGSTASAASTMKAPEASRPPTAPAPASTAPVATSATAA
LAADSAPVASSTPLSDSDVYGQAASNLVAGSNLEGTIQQILDMGGGTWDRDTVVRALRAA
YNNPERAVEYLYSGIPEQAEAPPVARAPVVGQTTNPAAQPQQPAQTAAIPTSGPNANPLD
LFPQGLPNMGASGAGAGSLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPNLMRLI
QEHQGDFLRLINEPAEGGEGNILGQLAEAMPQAVQVTPEEREAIERLEAMGFDRATVLQV
FFACNKNEELAANYLLDHMHDFQD
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttccgtcaaaactctcaaaggcactcacttcgatatcgaagtcaaaccagaa
gatgcggttgcggatgtaaagaagaacatagaaactgttcaaggggcagatgtttatcct
gctgcacaacaaatgcttatctataagggaaaagttcttaaagatgacacgacactggct
gaaagcagtgtcactgaaaatagctttattgtgatcatgttgacaaagaataaggttgca
tctggggagggttcaactgcttcagccgcttctacaatgaaagctcctgaggcaagtagg
ccaccaactgctccagcaccagcttctactgcacctgttgcaacgtctgctacggctgca
cttgctgctgactctgctcctgttgcttcaagtactcctctgtcagattctgatgtttat
ggccaagcagcatctaatctggttgcagggagtaacttagagggaacaatccaacaaatt
cttgacatgggtgggggcacctgggacagggacactgttgtccgtgccctgcgtgctgct
tataataacccagagagagctgttgaatatttgtattctggcatccctgagcaagctgaa
gctccacctgtggcccgtgctcctgtagttgggcaaaccactaaccctgcagcacaacct
caacagcctgcacaaacggcagctattcctacaagtggaccaaatgcaaatcccttagat
ctctttccccagggccttcctaacatgggtgcaagtggtgctggggctggctctcttgat
tttttacggaacagtccacagtttcaagctttgcgagcgatggtgcaagccaacccacaa
atattgcagcctatgcttcaagagttggggaaacaaaatcctaatttaatgagacttatt
caagagcatcagggtgactttcttcgcttgatcaatgaacctgctgaaggtggagaggga
aacattttggggcaattagctgaggcgatgccacaagctgtgcaagtcacacctgaggaa
cgtgaagccatagaacggcttgaagcaatggggtttgaccgtgcaactgtgctccaagtg
ttctttgcttgcaacaagaatgaggaacttgcagccaactaccttttagatcatatgcat
gattttcaggattga
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