Gossypium hirsutum (upland cotton): 107920532
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Entry
107920532 CDS
T04793
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
ghi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107920532
03083 Polycomb repressive complex
107920532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107920532
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
107920532
Histone modification proteins
HAT complexes
HATB complex
107920532
HDAC complexes
Sin3A-HDAC complex
107920532
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
107920532
PRC2.2
107920532
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
107920532
Heterochromatin formation proteins
Other heterochromatin formation proteins
107920532
Chromatin remodeling factors
NuRD complex
107920532
NuRF complex
107920532
NuRF complex (fruit fly)
107920532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
WD40_RFWD3
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD_LRWD1
Beta-prop_RIG_1st
eIF2A
Beta-prop_HPS5
MIOS_WD40
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
107920532
NCBI-ProteinID:
XP_016705767
UniProt:
A0A1U8KTG2
LinkDB
All DBs
Position
D13:1241723..1244465
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLQDSENDARQYDHDRSDLGGFGCASGKVQIIQ
QINHEGEVNRARYMPQNSFIIATKTVSAEVFVFDYSKHPSKPPLDGACSPDLRLRGHSTE
GYGLSWSKFKEGHLLSGSDDAQICLWDINATPKNKALDAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRAPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDVPGDES
AKGS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaggaggagatgcgtggcgagatcgaggagcgactcatcaacgaagag
tacaaaatttggaaaaagaacactcctttcctctacgatcttgtcattacccatgccctc
gaatggccttctctcaccgtcgaatggctccccgaccgtgacgaacctgccggcaaagat
tactccgtccaaaagatgatcttgggtactcacacctctgaaaacgaacccaattacctc
atgcttgctcaagtccagctccctctccaagattccgagaacgacgctcgtcaatatgac
cacgataggtctgacctcggtgggtttgggtgtgctagcggtaaggttcagattattcaa
cagatcaatcatgaaggggaagttaatagggctcgttatatgcctcagaattcttttatt
atagctactaagactgttagtgctgaggtttttgtgtttgattatagtaaacatccttcg
aaaccgcctttggatggggcttgtagtcctgatttgagacttaggggtcacagtactgaa
ggttatggtttgtcttggagtaagtttaaagaaggtcatttgcttagtggttctgatgat
gctcagatttgtttatgggatattaatgccactcccaagaacaaagctcttgatgctatg
cagatctttaaggttcatgaaggcgttgttgaagatgttgcctggcatctcaggcatgaa
tacttgtttgggtctgttggggatgaccaatatttacttatttgggacttgagagcccct
tctgttaccaagcctatccaatctgtagttgctcaccagagtgaggtcaactgcttagct
ttcaatccctttaatgagtgggttgttgcaacgggttctaccgataagacagttaagtta
ttcgatctacgcaagatcagtactgcactccacacctttgatagccacaaggaagaagtt
ttccaagtcgggtggaatccgaagaatgagactatcttagcatcctgttgtcttggcaga
aggctcatggtatgggatctcagcaggatcgatgaagaacaaacacccgaagatgccgaa
gatggtccacctgagttgctattcattcatgggggtcacactagtaaaatatctgatttt
tcatggaatccatgtgaagattgggttatagctagtgtagctgaagataacatccttcaa
atatggcaaatggcggagaatatctaccacgacgaggacgatgtacccggagatgaatct
gccaaaggctcttaa
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