Gossypium hirsutum (upland cotton): 107920673
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Entry
107920673 CDS
T04793
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03410
Base excision repair
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107920673
03410 Base excision repair
107920673
03420 Nucleotide excision repair
107920673
03430 Mismatch repair
107920673
03440 Homologous recombination
107920673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107920673
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107920673
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
107920673
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
107920673
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
107920673
MMR (mismatch excision repair)
DNA polymerase delta complex
107920673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
divDNApol
Motif
Other DBs
NCBI-GeneID:
107920673
NCBI-ProteinID:
XP_016705974
UniProt:
A0A1U8KYX0
LinkDB
All DBs
Position
D13:complement(50244877..50255169)
Genome browser
AA seq
1097 aa
AA seq
DB search
MNKGGNPRKRPPPPSSHQPSPTSKHQATTPTPPPPSTEEDFVDEDVFFDETLMGEEDVES
LILRDFEERQALASRLSKWARPPLSDAYISQSRSIVFQQLEIDYVIGESHKGLLPDSSGQ
AAIIRIFGVTGEGHSVCCLVHGFEPYFYISCPPGMGPDDISHFHQTLEGRMKEMNRNSKV
PKFVRRIELVQKRSIMYYQQQKSQPFLKIVVALPTMVATCRGILDRGIQIDGLGMKSFIT
YESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTAKNMSYCQLEFDCLYSDLISHAPEGEF
SKMAPFRILSFDIECAGRKGHFPEPSHDPVIQVANLVTLQGEDQPFIRNVMTLKSCSPIV
GVDVMSFDTEKEVLLAWREFIREVDPDIIIGYNICKFDLPYLIERAQTLGIAEFPILGRI
RNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSE
QKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMYVYNYVEMARVTGVPIS
FLLSRGQSIKVLSQLLRKSKQKNLVIPNVKQAGSEQGTFEGATVLEAKAGFYEKPIATLD
FASLYPSIMMAYNLCYCTLVTPEDVHKLNLPPECVNRTPSGETFVKPELQKGILPEILEE
LLAARKRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISSSVTS
YGRQMIEHTKKLVEDKFTVLGGYEHNAEVIYGDTDSVMVQFGVSDVEAAMNLGREAAEHI
SGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTNPQKFDKMDTKGIETVRRDNCLLVKNL
VTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL
AERMRKRDPATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQIS
KPLLRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALICNSDRT
LCSHCKGREAELYYKTVSQVSELEELFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKK
AQKDMVEAKRQLDRWNF
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagggcggcaacccacggaagaggccaccaccgccttcttcacaccagccatct
ccgacttcgaagcaccaagcgacgactccgacgcctcccccaccgtcgacggaagaagat
ttcgtcgacgaagatgtcttctttgacgaaacccttatgggggaagaagacgtggaatcc
ctaattctacgcgacttcgaggaacgtcaagctctcgcttctcgtctttccaagtgggct
cgccctcctctctctgatgcctacatttcccagtctcgtagcattgttttccaacaattg
gagattgattatgtgattggagagagtcataaaggtttgctgcctgattcttctggtcaa
gctgccattatccgaattttcggggttactggagaaggacatagcgtttgttgtcttgtt
catggatttgagccgtatttctacattagctgccctccaggaatgggtcccgatgatatc
tcacattttcatcaaacgcttgagggtaggatgaaggagatgaacagaaacagcaaggta
ccgaagtttgttcgacgtattgaattggttcagaaaagaagtattatgtattaccagcaa
caaaagtctcaaccttttctcaagattgtagtggcattgccaacaatggttgctacctgt
cgtggcattcttgatagaggcatacaaattgatggccttggtatgaagagcttcattaca
tatgaaagcaatgttctttttgcactgcgtttcatgattgattgcaatattgttggtggt
aattggattgagataccggctggtaaatataagaagacagcgaagaatatgtcctactgc
caattggagtttgattgcttgtattcagatttgattagccatgcccctgagggggaattc
tcaaagatggctccatttcgcatattgagttttgatatagagtgtgctggtcgcaaaggt
cattttccagagccttctcatgatcctgtaatccaggtagcaaatctagttactttgcaa
ggagaagatcagccattcattcgtaatgtcatgacccttaagtcatgctccccaatagtt
ggtgttgatgtaatgtcttttgatacagaaaaagaagtcttgcttgcttggagggaattt
atccgtgaagtggaccctgatattataattggatataacatttgcaagtttgatttgcca
tatcttattgagagagcacaaacacttggaatagcagagtttccgatacttggccgcatc
aggaatagtagggttcgtgtaaaagatacaacattttcttctagacagtatggaactagg
gagagcaaagaagttactgtggaggggagagttcaatttgatttgctccaggctatgcaa
agggactacaaactaagttcttattcattgaattcagtttcagcacactttctatctgag
cagaaagaggatgttcaccattcaataatatcagatcttcagaatggaaatgctgagact
aggaggcgtcttgctgtctattgtttgaaggatgcttaccttccccaaaggcttttggat
aaactaatgtatgtttacaattatgttgagatggctcgtgtcacaggtgtgcctatatct
tttcttctttctagaggacaaagcatcaaggtactttctcaacttcttaggaagtctaag
cagaagaaccttgttattccaaatgtcaaacaagcaggatctgaacagggaacgtttgaa
ggtgcaactgtgttggaagcaaaagcaggattctatgaaaaaccaattgcaacactggat
tttgcgtctttgtatccatcaattatgatggcatataatttatgctattgcacattggtg
actcctgaagatgttcacaaactcaacctcccaccagaatgtgttaacagaactccgtct
ggtgaaacatttgttaaaccagagctacagaaggggatacttccagaaatattggaagag
ctattagctgctcgtaaacgagcaaaagctgatttgaaggaagcaaaggatccacttgag
aaagctgttctagatggccgacagctggccttaaaggtaagtgcaaattctgtatatgga
tttacaggagctactgttggtcagttaccatgtttagagatttcttcgagtgttacaagc
tatggtcgccaaatgattgagcacaccaagaagcttgttgaagataaatttacagtgcta
ggaggctatgaacacaatgctgaggttatatatggggacacagattcggtgatggtacaa
tttggtgtgtctgatgtagaagcagcaatgaacttggggagagaagctgcagaacacatc
agtggaacttttacaaaacccatcaagctagagtttgagaaggtttattatccctatctt
ttgattagcaagaaaagatatgctggtttattttggacaaatccacaaaagtttgacaaa
atggacactaaaggcatcgaaactgttcgaagagacaattgtttattggtcaaaaacctt
gtaactgaatgcctgcacaaaatactgattgatagagatattcctggtgcagttcaatat
gtcaagaataccatttcagatcttctcatgaatcgaatggatttgtcacttttggttatt
actaagggtctgacaaaaactggagatgattatgaggtaaaagctgctcatgttgaactt
gctgaacgtatgcgcaagcgagatcctgcgactgctccaaatgttggggatcgggtgcct
tatgtcattattaaagctgcaaaaggcgccaaggcttatgagaggtcagaggacccaatc
tatgtgctagaaaataacatccccatagatcctcaatattaccttgaaaatcaaattagc
aagccacttttaagaatttttgagcccattttaaagaatgctagcaaggaacttctccat
gggagtcacacaagatccatttccatatcaactccgtcaaacagtggaataatgaaattt
gcaaagaaacaacttagttgtattggctgcaaagcgctaatttgcaattcagatcgaaca
ctctgttcacactgcaagggaagagaggcagaactttattataaaacagtttctcaagtg
tcagaactagaggagctttttgggaggctatggacacagtgccaagagtgtcaaggctct
cttcaccaggatgtgctctgcactagtcgggattgtccaatattttaccggagaaagaaa
gcacagaaagatatggtagaagccaagcggcagttggaccggtggaacttttaa
DBGET
integrated database retrieval system
