Gossypium hirsutum (upland cotton): 107920900
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Entry
107920900 CDS
T04793
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Module
ghi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107920900
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
107920900
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107920900
NCBI-ProteinID:
XP_040963804
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Position
D12:1667218..1674102
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AA seq
420 aa
AA seq
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MSLEIPFKLLLLFSSFSFAGVPAGAATTGLGSQYAQLLPYNNQRTSHFFNVKTFGAQADG
LTDDTKAFLSAWNKACQATGEVDIMIPKGTYLVGPLKFAGPCENVSKIIVHMKGYLKATT
NLFKYGDGAGWVEFRWIEGLTLTGGGTFDGQGAKAWPYNSCSTDFNCKLLPTNVKFLAMN
RTIVRGITSVNSKFFHMALVECKNFKGSKIKISAPADSPNTDGIHIQRSSSVYFSRSLIG
TGDDCISIGQGNSQVTITSISCGPGHGISVGSLGRYKDEGDVSGLVVRDCTMIGTSNGIR
IKTWANSPGRSAATNMTFENINMENVTNPIIIDQAYCPFASCTPMGPSQVKLSDIYFKKI
KGMSLSAVAVALECSKGIPCQDIYLEDVHLELATGEKQVTSTCKNVRAKYIGSQIPPPCA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgaaatccccttcaaattactcttgctcttttcttcctttagcttcgctggt
gttcctgcaggagcagcaacaacaggtttaggatctcaatatgcccaactgctaccatat
aacaaccaaaggacctctcatttctttaatgtcaagacatttggtgctcaagccgatgga
ctcactgatgataccaaagccttcctatcagcatggaacaaagcatgtcaggctactggt
gaggtagacattatgattcctaaaggcacatatttggttggtccacttaaatttgcaggc
ccctgcgaaaatgtatctaaaataatagtccatatgaagggttatctcaaggcaacaaca
aacttgtttaaatacggagatggtgctggttgggttgaatttcgatggatagaagggcta
accttgactggaggagggacctttgatggtcagggtgccaaagcttggccttacaatagc
tgctccacagacttcaattgcaaacttcttccaactaatgtgaagtttttggcgatgaat
cggacgattgtaagaggcataacatcagtaaacagcaagttcttccatatggcccttgtc
gaatgcaagaacttcaagggcagcaaaatcaagatttcagcaccagcagatagccctaac
actgatggtatccacattcagcggagctccagtgtctacttttcgcgatcacttataggt
acaggtgatgattgcatctcaataggtcaagggaattctcaagtcaccataacaagcatc
agctgcggaccgggtcatggcatcagcgtcggaagtctcggaagatacaaggatgaaggt
gatgtaagtggtttggtggttagagattgcaccatgatagggacctcaaatggcattagg
atcaaaacatgggccaactcgcctggcagaagcgcagcaaccaacatgacattcgaaaac
attaacatggaaaacgtgaccaatccaattattatcgatcaagcatattgtccatttgca
tcttgcacaccaatgggaccatctcaagtgaaactgagtgacatttatttcaagaaaata
aagggcatgtcgttatctgcagtggcagtagcactagaatgtagcaaagggattccttgc
caggatatttaccttgaagatgttcacttggagctggcaactggggagaaacaagtcact
tccacttgtaaaaatgttagggctaaatacattggctcccaaatcccaccaccatgtgct
tag
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