Gossypium hirsutum (upland cotton): 107920972
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Entry
107920972 CDS
T04793
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107920972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107920972
04121 Ubiquitin system [BR:
ghi04121
]
107920972
03036 Chromosome and associated proteins [BR:
ghi03036
]
107920972
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107920972
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107920972
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107920972
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107920972
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107920972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-HC5HC2H_2
zf-RING_6
zf-C3HC4_4
zf-C3HC4_3
RTT107_BRCT_5
zf-RING_5
zf-rbx1
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
107920972
NCBI-ProteinID:
XP_016706298
UniProt:
A0A1U8KZ03
LinkDB
All DBs
Position
D01:25585573..25591081
Genome browser
AA seq
1001 aa
AA seq
DB search
MGDPSHLEKMGRELKCPICLSLLNSAVSLTCNHVFCNVCILKSMKSGSDCPVCKVPCRRR
EVRPAPHMDNLVSIYKSMEVASGFNIFVTQDAPLDTSADSGKRVKNDLNCCERMDNQGAN
KGRGSREAKSTETSDPISVKPSFPTNKRVQVPQYPLSETSMLPEKNGGGLIEVTEDESKM
SSDILKENNLGEKGEQILSPFFWLREEDVERPSQLSDGDQCLYITPPGLPSFSDMKDSDD
EGFSKEEVHGNRDHLNLFDSEMFEWTQGACSPELLSSPDKMQVADTYEPASQGASTAEPC
NNGTCMITGHDASEEMLPNIESLRIQCVSSNKIRSCKSKELGKKQRKTAQKNIADRTSSH
ISGDHVNLGKGSEDFNKKQKDDCSSSSYLAKTRKNCKVAGLDHHVTEPMASHFSAKAPKQ
EDTPLAAIVGMGKCGDENENLRMVKRCRKITAQCQNKSCSKLKKQKLSLVKVDTPKEVLT
VCGQANEYMIQQKSSLPVPLAHENAAEQFRKGLSKHTREVKLAPTLKSEKNSGCKKKIKV
YFSDDMKSWLPEDQQQQGGNANISLERVSEKVHGRTTVGNSESSIVKKLPLANGVALHKC
ETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNGGSKVIHSHKNCTEWAPNVYFE
NDKAINLEAELSRSRKIKCSCCGLKGAALGCYEKSCRKSFHVPCAKLVSQCRWDVDNFVI
LCPLHASSKLPNEKSESQGIRKRRNLRGQLLIHHNEIPINDEVSVQKKWNTCESGNKLVL
CCSGLTVEEKEIMSEFEKLAGVTVLKRWDSIITHIIASTDENGACKRTLKILMGILEGKW
ILNIKWVKACIKAMKLVDELKYEITIDVHGIRDGPRLGRLRLQNKQPKLFDGCKFYIMGD
FEPFYKGDLQDVLIAAGGTILHRKPISGDPGARLLGSPAFPIFIIYSVELPVKCDPSKKH
MILSRRQLNAEALASSTGAKAVSNSWVLSSISACKLLSLGE
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgggggatccaagtcacctcgagaaaatgggcagggagctgaaatgccccatttgcttg
agtcttttgaactctgccgtttcgctcacttgcaaccatgtcttctgcaatgtctgtatt
ttgaaatcaatgaaatcgggttccgattgtcccgtctgtaaagtaccctgccggcgtcga
gaggttcgtccagcccctcacatggataacttggttagcatctacaaaagcatggaagtt
gcttcaggtttcaatatatttgtcactcaggacgcgcctctggacacttcagcagattct
ggaaagcgagttaaaaatgatctcaattgttgtgaaagaatggataatcagggagcaaac
aaaggaagaggatcaagggaggctaaatcaacggaaacttctgatcccatttctgtgaag
ccttcttttccaaccaacaaaagggttcaggtgccacaatatcccctttcagaaacatcc
atgctgcctgaaaagaatggaggtggattgattgaagtcaccgaggatgaatctaaaatg
agttcagatattctgaaggagaacaatctaggagaaaagggggagcaaatactttcgccc
tttttctggttgagggaggaggatgtagaaaggccaagtcagcttagtgatggggatcaa
tgtttgtacataacaccacctggacttccttctttcagtgatatgaaggattctgatgat
gaaggtttttctaaggaggaggtgcatggaaaccgtgatcatctgaatctttttgatagt
gaaatgtttgaatggacacagggagcttgttccccagaacttctttcaagtcctgataaa
atgcaggttgcagacacctatgaacctgcatcacagggtgcaagtacagctgagccctgt
aataatggcacatgcatgataacaggacatgatgcttcagaggagatgctgcctaatata
gaatctctcagaatccagtgtgttagtagtaataagatcaggagttgtaaatccaaggag
ttgggtaagaaacagagaaagactgcccaaaagaatatagctgacagaactagcagtcat
atttctggagatcatgtcaatctgggaaaagggtctgaagattttaataaaaaacaaaaa
gatgactgtagtagttcttcatatttggctaagactaggaaaaattgtaaggtggctggt
ttggatcaccatgtaactgaaccaatggcatcacatttttctgccaaagctcctaaacag
gaagacacaccattggctgccatagtgggtatggggaaatgtggtgatgaaaatgagaat
ttgaggatggtaaaacgttgcaggaagatcactgcccagtgccaaaataaatcttgttca
aagttgaagaaacaaaaactaagtttggttaaagttgatacccctaaagaagttttaacc
gtttgtgggcaggcaaatgaatatatgattcaacagaagtcttctcttcccgttccctta
gctcatgaaaatgctgctgagcagttcagaaaaggattgagtaaacatactagagaagta
aagttggctccgactttgaaaagtgaaaaaaactcgggttgtaagaaaaagattaaagtt
tattttagtgatgacatgaaaagctggttgcctgaagaccaacagcagcagggaggaaat
gctaacatttctctagagagagtaagtgaaaaggttcatgggaggactactgttggaaat
tcagagagctcaatagtaaagaagttgcctctagctaatggagtggcactgcataaatgt
gagaccattacaattaaaatacaatgtgctttctgtctttctatggaagaaactgaggct
tctggagagatggttcattactatgaaggcagttctgttcctctagattacaatggtggc
tccaaggtcatacattcacacaagaactgtactgaatgggcccctaatgtttattttgaa
aatgacaaggcaatcaaccttgaggctgaactctccagaagtcgaaaaataaaatgctcc
tgttgtggactcaaaggtgcagcgttgggctgttatgaaaaaagttgtcggaagagtttc
catgttccctgtgcaaaactagtctcacaatgccggtgggatgtcgataactttgtaatt
ttatgccctctccatgcctcctctaagttgcctaatgaaaagtcagagtcccaaggaatc
cgaaaaagacgcaatttaagaggacagttgctgatacaccacaatgaaattcctataaat
gatgaagttagtgtgcagaagaaatggaatacttgtgaatcaggcaacaaattggttctc
tgttgctcaggtctcacagttgaggaaaaggaaatcatgtctgaatttgagaaattagct
ggtgttacagtgttgaagagatgggattcaattattacccatatcattgcatccaccgat
gaaaatggagcatgcaaaagaacccttaaaattttaatgggtatcttggaggggaagtgg
atactgaatataaagtgggtcaaagcttgcatcaaagccatgaaacttgttgatgagttg
aaatatgaaataactattgatgttcatggaatcagggatggtccccgacttggaaggctg
agactccagaataagcaaccaaagctttttgatgggtgtaagttctatataatgggggat
tttgaacctttttataagggagatctacaggatgttttaatcgcagcaggaggtaccatt
ctgcatagaaaacccatatcaggtgacccgggagcccgattattgggttcccctgcattt
ccaatcttcataatttatagcgtcgagttgcctgtcaagtgtgatcccagcaagaagcac
atgattttaagccgcaggcaattaaatgcggaagctctggcaagttcaactggagccaaa
gcagtaagcaattcttgggttttgagctccatatctgcatgcaaattgctaagtcttggc
gaataa
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