Gossypium hirsutum (upland cotton): 107921046
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Entry
107921046 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107921046
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107921046
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Endotoxin_C
Motif
Other DBs
NCBI-GeneID:
107921046
NCBI-ProteinID:
XP_016706388
UniProt:
A0A1U8KZ88
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Position
D01:complement(23693528..23698180)
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AA seq
644 aa
AA seq
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MPSQGVKLYVQDKHVVLDNGILQVTISNPDGIVTAIQYNGIDNLLAVENQEADRGYWDLV
WNLAGSKGTKGKFDRIEATSFEVIVENEDQVELSFSRKWDPSLEGKIVPLNIEKRFIMLR
NSSGFYTYAIYEHLKEWPAFNLDRFRVAFKLRKDKFHYMAMADNRQRYMPLPDDRLPYRS
QTLACPEAVLLVDPMETEFRGEVDDKYQYSCENKDNRVHGWICNDPPVGFWQITPSDEFR
SAGPHKQNLTSHVGPTTLAVMHSVHYSGEDLILKFGSNEAWKKVFGPIFIYLNSLSDAGG
NPLSLWEDAKQQMRIEVQDWPYTFPASQDFPQSHQRGNVSGRLLVKDRYVCKDDIPANGA
YVGLAPPGDVGSWQSEVKGYQFWTRADEDGYFCINNIWTGDYNLYAWVPGFIGDYKYDVI
ITPSAGYDIYMGDLVYEPPRDGPTLWEIGVPDRTAAEFYVPDPSPMFVNRLYVNHPDRFR
QYGLWERYADLYPDRDLVYTVGVSDYTKDWFFAQVTRKNDDDTYQGTTWQIKFKLDCTAN
ETETYKLRLALATAHAAELQVRVNDDGKSPLFSSGQIGKDNTIATHGIHGLYRLYHVGIP
GNLLLEGDNTIFLTQPKSTSPFQGIMYDYIRLEGPASSNGNKKA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgccatctcagggagtgaagttatatgtccaagataaacatgtggtcttggataatggt
atactgcaggtcacaatatctaatccagatggcattgtcactgctattcaatataatggc
attgacaatttgcttgctgttgaaaaccaggaagctgatagagggtattgggacctcgtc
tggaatctagcaggaagcaaaggaacaaagggtaaatttgacaggattgaagcaacaagt
tttgaagtaatagtggaaaatgaggatcaagtggagctctcatttagtagaaaatgggat
ccttcccttgaaggcaaaatcgttcccttgaacatcgagaagaggtttataatgcttcgt
aattcctcaggattctacacctatgcaatttacgagcacttgaaggaatggcctgctttc
aaccttgacaggttcagggttgcattcaagttgaggaaagacaagtttcattacatggca
atggcagacaacagacaaagatacatgcccttgcctgatgaccgtttaccttacagaagc
caaaccttggcttgtccagaggctgtcctactggttgatccaatggaaactgagtttaga
ggagaggttgatgacaagtaccagtattcatgcgagaacaaggacaacagggtccatgga
tggatttgcaatgacccgccggtcgggttctggcaaataactcctagtgatgagtttcga
tctgccgggcctcacaagcaaaaccttacctctcatgtcggccccaccacccttgctgtt
atgcacagtgttcattattcaggagaggatttgatattgaaatttggaagtaatgaggct
tggaagaaagtttttggccccatttttatttatcttaattctttgtcggatgctggaggt
aacccactctcactttgggaagatgctaaacaacagatgaggattgaagttcaagactgg
ccttatactttccctgcttctcaagactttccacagtcccatcaaaggggaaatgtcagt
ggtagattattagtgaaagacagatatgtttgcaaagacgacatacctgccaatggtgcc
tatgtggggttagcaccccctggagatgttggatcttggcagagtgaagtcaagggctat
caattctggactagagctgatgaagatggctatttctgcattaacaatatttggaccggt
gactataatctatatgcatgggttccaggtttcattggtgattataaatatgatgttatc
atcacccctagcgcagggtatgatatatacatgggtgatcttgtatatgagccgccaaga
gatggccctacattgtgggaaatcggagtcccggatcgcactgctgcagaattctacgtt
cctgatccgagtccgatgtttgtcaacaggttatatgttaaccatcctgacagatttagg
cagtatgggttatgggaaagatatgcagatttatatcctgatagagatttggtttacaca
gttggggttagtgactatacaaaagactggttttttgctcaggtcaccagaaagaatgat
gacgacacatatcaaggaactacatggcaaatcaagttcaaactagattgtactgcaaat
gaaacggaaacatacaaactacgattggcgttggctactgcacatgctgctgaacttcag
gtaagggtcaatgatgatggaaagtctcctctattttcaagtggacaaattggtaaagac
aacacaatagccacacatggtatccatgggctttaccggctttaccatgtcggtattccg
gggaatctgcttcttgaaggagataacaccatatttctaactcaaccgaaaagcaccagc
cctttccaaggaattatgtatgactatattcgattagaaggccctgcatcttctaatgga
aacaagaaagcttaa
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