Gossypium hirsutum (upland cotton): 107921769
Help
Entry
107921769 CDS
T04793
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107921769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107921769
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107921769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
MvcA_ins
Motif
Other DBs
NCBI-GeneID:
107921769
NCBI-ProteinID:
XP_040943092
LinkDB
All DBs
Position
D01:16055424..16063202
Genome browser
AA seq
300 aa
AA seq
DB search
MGLPNASGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASAN
GSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVVA
KQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEIP
VVSLNDDGKIVLSEEQGLSDREPVNKEKRKINLSSVPFSLTCVLYKNYILADPTAEEESI
MDTIVTVVLDSSSQLVSLQKPGGTVLAYTSAIQDCIALTRQRVKELQKILEEAISGMEVD
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggattaccaaatgcaagcggtgacttgtcaactgaagttgaggtggatgctttcaga
cgcctctttccccttcgtttctacgagaaacatcttttagagtctatacgtcctgatgct
cgtccgcttggaagagcaagagaaaccaccattgcccttggggctgttgcatctgctaat
ggttcagcacttgcaaaaattggttcaactactatgttggctgctatcaaaatggaggtc
atgaccccttcattggaaacaccggatgagggttgtatagctattgatttccacatgcct
ccaatttgttctccaattgttaggcctggcagaccggctgaggcagcaccagtcgttgca
aagcaattgtcagacactattttaagctctggcatgatcaatttgaaggaactgtccttg
gttagtggaaaagctgcttggatggcatatttggacatatactgtttggatgctgatggt
gctctttttgacactgcattactctcagcggttgctgccttttctcatttggaaatccct
gtggtatctctcaacgatgatggaaagatcgttttatcagaggaacaaggactatctgac
agggaaccagtcaataaggagaagagaaaaattaatctgagcagcgttccgttttcattg
acatgtgtactttacaagaactacattttggcagatcctactgccgaggaagaatctatt
atggacactattgtaaccgtggttttagattcatctagtcaactcgtctcgcttcaaaaa
ccaggtggaacagttctagcatatacatcagctatccaggactgcattgcattaacacgg
caaagagtgaaggaacttcaaaagattctagaggaagccatttctggtatggaggttgac
taa
DBGET
integrated database retrieval system
