Gossypium hirsutum (upland cotton): 107921778
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Entry
107921778 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 36 isoform X2
KO
K12190
ESCRT-II complex subunit VPS36
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107921778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107921778
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107921778
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
107921778
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107921778
Exosomal proteins of colorectal cancer cells
107921778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
PH_TFIIH
Rrn6_beta-prop
Serglycin
Motif
Other DBs
NCBI-GeneID:
107921778
NCBI-ProteinID:
XP_016707118
UniProt:
A0A1U8L168
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All DBs
Position
A09:complement(85079443..85084462)
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AA seq
456 aa
AA seq
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MSNFFSKAEVTSSGRPVLPRNEVECHLLSAVDLEPEDHRHFSLLKSGLLILTTHRLIWLP
SSSASTPTSASAIPLAAISHIFSSKKSLKSVFHSPRIRFQVLVSSDGRVFDPGSGSGSSS
GSGSRSVVVTAVIRGKGDCDGFLVKFWDSWRARAWETTEISGSGSASASGSGAATGTGGG
LYSSDGSVRMVGVAGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMRQKLL
FGTSSQTSGTNDEDMGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVRIPLE
RAGGMINLIDAYCLFNRARGTELISPDDMLQACSLWEKFDVPVMLRKFDSGVMVIQNKSH
SDEEVFARIKSLVTKPEALRTGISPTDAAMTLGIAPAMAKEHLLTAESKGLLCRDISPDG
FRFYINLFPEIDPCNMYFVKDNGICSTWIKAVSTTG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactttttctccaaggcggaggtgacaagcagcggccgtcctgtcctcccccgc
aacgaagtcgaatgccaccttctctccgccgtcgacctcgaacctgaagaccaccgtcac
ttctccctcttaaaatcggggctcctcatcctcaccacccaccgcctcatctggctacct
tcttcttccgcctccacccctacttccgcctcagccatccctcttgctgccatttcccac
atcttctcttccaaaaaatctctcaagtccgtcttccactcccctaggatccgcttccaa
gtcctcgtctcgtccgatggtcgggtcttcgatccaggttccgggtctggttccagttca
ggttcgggctcgagatcagtcgtagtaacggcagtgattagagggaagggggactgtgat
gggtttttggtgaagttttgggacagttggcgggcgagagcttgggagactactgagatt
tcaggttccggctcagcttcggcttcgggttcaggggcagccacaggaaccggtggaggg
ttgtactcgagtgatgggtcggtgaggatggttggggtggcgggtattttaaggaaggag
caagaaatgtgggagagtactgataagagtttgcaggatgcttttcaggacttaaatgct
ctcatgagtaaagctaaagagatggtgatgctagcagaaaaaatgagacaaaagcttttg
ttcggaacgagttctcaaacaagtggaacaaatgatgaggatatgggttcaaaggaagag
atgcaagattggttgttgagtgttggcataatatccccagtcactaaagagtctgcaggt
gccctgtaccatcaacaattgtcccgtcagctggcagattttgtgagaattccactggag
agagcaggtggaatgatcaaccttatagatgcctattgtctcttcaatcgtgctcgtggc
acagaattgatctctccagatgatatgttgcaagcgtgttctttgtgggagaaatttgat
gttccagtgatgcttaggaagtttgatagcggagttatggtgatccaaaacaagtcccac
agtgatgaggaggtttttgctagaatcaaaagccttgtgactaagcctgaagcgcttcga
actggtataagtccaactgatgctgcaatgacattagggattgctccggccatggccaag
gagcatcttctaactgcagaaagcaaaggtttgctatgcagggatataagccccgatggc
tttcggttttatattaacctgtttcctgaaatcgacccatgtaatatgtattttgtgaag
gataatgggatctgcagtacttggatcaaagcagtttctactaccggttga
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