Gossypium hirsutum (upland cotton): 107921785
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Entry
107921785 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107921785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107921785
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
107921785
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
HECT type E3
107921785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
ARM_ARMC5
Arm
HEAT_2
HEAT_EZ
TFIIA
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
107921785
NCBI-ProteinID:
XP_040943388
UniProt:
A0ABM2ZL64
LinkDB
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Position
D01:55112172..55121603
Genome browser
AA seq
1907 aa
AA seq
DB search
METRSRKRAEASSAAPSSSPSGPTTRSHKRARLSSSSSPAAATTTTPRSRTSRAAAALMD
STTTESSSGSRRDRRPSKANQTTTSDSPNLASDRGKEKERDPSACDRDRDRDRDRDRDRD
NRDNNSNNPERNLGLIMDTSGGDDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDD
LLPSSAMGSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVD
SFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMD
LAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAS
DYVMEAVPLLTNLLQYHDSKVLEHASVCLTRIADAFASSPDKLDELCNHGLVTQAASLIS
TSNSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGISANSS
VPPALSRPAEQIFEIVNLANELLPPLPQGTISLPASSNMFVKGSILMKSPATSSDKQENS
DENAPKVSAREKLLNDQPELLQQFGVDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSS
AEMIQNLLSVTNISSFLAGVLAWKDPHVLVPSLQIAEILMEKLPGTFSKMFVREGVVHAV
DQLVLIGNQNATAAQASPLEKDNDSVSGTSSRSRRYRRRSGNSNPEGGSVEESKNQASLN
IGSPANTVEIPTANSNIRAAVSACAKAFKDKYFPSDPGAVEVGVTDDLIHLKSLCMKLNA
GVDDQKTKAKGKSKASGSRLVDFSSSKEEYLIDVISEMLAELSKGDGVSTFEFIGSGVVV
ALLSYFSCGYFSQERVSDVNLPKLRHLALKRLKSFISVALPSSVDEGSIAPMTVLVQKLQ
NALSSVERFPVVLSHSSRSSGGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNIVMI
DPLASLAAVEEFLWPRVQRSDNAQKPCVSVGNSDSGNTPSGAVASSPSTSTPASTARRHS
SRSRSSVNIGDVARKESSQEKSTSSSKGKGKAVLKPAQEESRGPQTRNAARRRAVLDKDT
PMRPENGDSTSEDEELDLSPVEIDDALVIEDDDISDDEDDDHEDVLRDDSLPVCMPDKVH
DVKLGDSAEDGTTMPAASDNQINAASGSSSRAAAVSGSDSADFRSSYGSRGAMSFAAAAM
AGFGSANGRGIRGGRDRQGRPQFGNSNEPPKLIFTVGSKQLNRQLTIYQAIQRQLVLDED
DDERYGGSDFTSTDGRGMWSGIYTITYQRADTQADRTSVGGSGSAPASKSTKSCSPSSNS
DSQTHRMSLLDSILQGELPCDLERSNPTYTILTLLYVLEGLNQLATRLRAQIVSDGFAEG
KILNLDELSTPGSRVPYEEFINGKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFP
FETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLHRQKVRVSRNRIFDSA
AKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLGMWRSNSTWDKSIME
IDGDEEKNEKTAGSVGGDIVQAPLGLFPRPWPPNADASEASQFFKVIEYFRLLGRVMAKA
LQDGRLLDLPLSTPFYKLVLGQELDLYDILSFDGEFGKILQELHFLVCRKQYLESTGGES
SAAVDELCFRGTPIEDLCLDFTLPGYPEYILKPGDGTVDINNLEEYISFVVDATVKAGII
RQMEAFRAGFNQVFDVASLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYTAKSPAI
VNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAMLNPKLTIVRKHSSSAIAATSNGSGP
SESADDDLPSVMTCANYLKLPPYSSKEIMYKKLLYAIYEGQGSFDLS
NT seq
5724 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgcagccggaagcgggcggaggcctcctcagctgccccttcatcttccccc
tctggtcctaccactcgttctcacaaacgcgctcgtctctcttcttcctcatccccagcc
gctgcaactaccacaacgcctcgctctcgcacttcccgcgctgccgctgctttaatggac
tccaccacaaccgaatcttcctctggttcccgccgcgatcgccgtcccagcaaagctaat
cagaccacgacaagtgacagtccaaatctcgcctccgataggggcaaagaaaaggaacgt
gatccaagtgcttgcgatagagatagagatagagatagggatagagatagggatagggat
aatagagacaacaattctaacaaccctgagagaaatttagggttaattatggatacctct
ggaggtgatgacgatgataatgatagcgaaggcggtgtagggattttgcaccagaatctg
acgtcagcaagcagcgcgttacaaggcttgttgaggaagcttggtgccgggcttgatgat
ttgctgccgtcatcggctatgggttctgcatcttcttcccatcagagcgggaggttgaag
aagattctgtctgggttgcgtgctgatggagaggaagggaagcaagtggaggcgttgacg
cagctctgcgagatgctttcaattgggactgaggagtccttgagcacgttttctgtggat
tcatttgttcccgtgctcgttggattgcttaatcatgagagtaatcctgatattatgctt
cttgcagcaagggcgctgacccatttgtgtgatgttttgccttcttcatgtgctgctgtg
gtgcattatggtgctgtttcgtgtttttgtgccaggttgctcactatagagtatatggac
ttggctgaacagtctctccaagctttgaagaagatatctcaggaacacccaactgcctgt
ttgcgagctggtgctctcatggcagttctttcttacttggatttcttctccactggggtt
cagcgagtggcactatctactgctgcaaatatgtgcaagaaactcccttcagatgcatcc
gattatgtcatggaagctgtacctctattaacaaatctgttgcagtatcatgattcaaag
gtgctggagcatgcttctgtttgtttgactcgcattgccgatgcctttgcatcatccccg
gataaattagatgagctatgcaatcatggactggttactcaagctgcatctctcatttct
acaagtaactctggaggtgggcaggcatcattaagcacaccgacatatacgggcttaatt
cgactgctttcaacatgtgcaagtgggtctcctttaggagctaaaactttacttctgctt
gggataagtggcatacttaaagatatactatcaggttctggcatttctgccaactcatcg
gttccgccggcattaagcagaccagcagagcagatttttgaaattgtcaatctggcaaat
gaacttcttcctccgttgccacaaggaacaatttccctccctgccagctctaatatgttt
gtcaaaggatctattttgatgaagtctcctgctaccagctctgacaagcaagaaaattct
gatgaaaatgctcccaaagtttcagcccgagagaaattgttgaatgatcaacctgaactt
cttcagcagtttggagttgatctgcttcctgttctcatacagatctatggttccagcgtc
aatggcccagttcgccataaatgtctctcggttattggaaaactaatgtacttcagcagt
gcagagatgattcagaatttgttgagtgtgacaaacatatcaagcttcttggctggtgtt
ttagcatggaaagatccacatgtcttggttccttccctccaaattgctgagatcctcatg
gaaaagcttcctggaaccttctccaaaatgtttgtcagagagggtgttgttcatgctgta
gatcagcttgtattaattggtaaccaaaatgccactgctgcccaagcatctcctcttgag
aaggataatgattctgtatctggaacgtcatcacgttccaggcgttacagacgacgcagt
ggaaactctaatcctgaaggaggttctgtggaggagtccaaaaatcaggcctctttaaat
attggctcacctgctaataccgttgaaattcctacagccaattccaatattcgtgctgca
gtaagtgcatgtgctaaagcatttaaagataagtatttcccctctgatcctggggctgtt
gaagttggagtaacagatgatcttatacacttaaaaagtctctgcatgaaattaaatgct
ggtgttgatgatcaaaagactaaggcaaaaggaaaatctaaagcttcagggtctcggttg
gttgatttttcttctagcaaagaagagtacttgattgatgtgatttctgagatgctagca
gaactaagcaagggggatggtgtatccacatttgagtttattggtagtggtgttgttgtg
gccttgttaagctatttttcttgtgggtacttctcgcaggagagagtttctgatgtaaac
ctgcccaagcttcgtcacctagcccttaaacgattaaaatcatttataagtgtggcactt
ccttcaagtgttgatgaaggaagtattgctcctatgactgtcctggttcagaagcttcaa
aatgctttatcatctgtagagcgtttccctgtagttcttagccattcatctaggtcttct
ggtgggagtgcacgcctctcttctggattaagtgcattgtctcagccttttaagttgcgg
ctttgtcgagcccaaggagagaagtctctacgtgactattcttcaaatattgtgatgatt
gatccattagcaagtctagcagctgttgaagaatttctttggccacgagttcaacgtagt
gacaatgctcaaaaaccgtgtgtgtctgtaggaaattctgactctgggaacacgcccagt
ggggctgttgcttcttctccatctacctcaactcctgcttcgaccgctcgtcgtcattct
tcaaggtccagatcatctgttaatattggagatgttgccagaaaggaatcatcacaggag
aaaagcacaagttcgtcaaagggaaaaggtaaggctgttttgaagcctgctcaagaggag
tcaagagggcctcaaacaagaaatgctgctcgtagaagagctgttctggataaagatacc
ccaatgagacctgaaaatggcgactctacgtctgaggatgaagaattggatttgtctcct
gtggagatcgatgatgctttggtgattgaagatgatgatatttctgatgatgaagatgat
gatcatgaagacgtgctcagagatgattctcttcctgtttgcatgccagataaagtacac
gatgttaaattgggcgattcagctgaagatggcacaaccatgccagcagcaagtgataac
caaattaatgctgcttctggatcaagcagcagagctgctgctgttagtggttcagactct
gctgattttaggagtagttatggctcaaggggtgcaatgtcgtttgctgctgctgccatg
gctgggtttggatctgccaatggtagaggtattagaggaggtagagatcggcaaggacgt
cctcagtttggcaattctaatgagcctccaaaattgatttttactgttggtagtaagcag
ctcaaccggcagttgaccatctatcaggccattcaaagacagcttgtgttggatgaggac
gatgatgagagatatggtggtagtgatttcacatctactgacggaagaggaatgtggagt
ggtatctacacaataacttatcagagggcagacacccaagctgaccgaacatcagtaggg
ggttcaggttctgccccagcatctaaatccactaaatcgtgttctcccagttccaactct
gattcccaaactcatagaatgtcactattagatagcatcttgcaaggggagcttccttgt
gatctagaaagatctaatcctacttacactatcttgacactgttgtatgtattagagggg
ttgaatcagctggcaactcgtttgagagctcagatagtttctgacggttttgctgaagga
aaaattttaaatctggatgagttgagtacccctggttctagagttccttatgaggaattt
attaatggtaaactcactccaaaactggctcggcaaatacaggatgcccttgctctctgc
agtggaagtctcccttcctggtgttaccagttgacaaaggcatgcccctttttatttcct
ttcgagacacgaaggcagtacttctattcaactgcctttgggttgtctcgtgcgttatat
cgtctgcagcagcagcagggtgctgatggccatggatcaactaatgagagggaggtgagg
gttgggagattacaccgtcaaaaagttcgtgtctcccggaaccgcatttttgattctgct
gcgaaggtaatggaaatgtattctagccaaaaagctgtgcttgaagttgaatattttgga
gaagttggcactggattgggtccaacgttggagttctatacactattaagtcatgatttg
caaaaggttggacttggaatgtggaggtctaattctacatgggataagtcaataatggaa
attgatggagatgaagagaaaaatgagaaaactgctggtagtgttgggggagatatagtc
caagctcctttggggttgttccctcgaccttggccaccaaatgctgatgcttctgaagcc
agccagttttttaaagtcatcgaatatttccggctacttggacgtgtgatggcgaaagct
cttcaagatgggcgacttttagacctgccactatcaacaccattttacaaacttgtgctt
ggtcaagagcttgatttgtatgatattctgtcttttgatggtgagtttgggaaaattttg
caagaactgcatttccttgtttgtcgaaagcaatatttggaatcgactggtggtgaaagt
agtgctgctgttgatgaattgtgcttccgtggtaccccgatagaagatctctgtttggat
tttacgcttccaggctatccagaatacatactgaaaccaggggatggcactgtggatatc
aataacttagaggaatacatatcctttgtcgttgatgcaactgtcaaggctggaattatt
cggcaaatggaggcatttcgagctggatttaatcaggtttttgatgttgcatcattacaa
atatttacaccccaagagttggactatttgctatgtggtcgcagagagttgtgggaggct
gagacacttgctgatcatataaaattcgatcatggatatactgcaaagagccctgcaatt
gttaatttacttgaaattatgggagaatttacaccagagcaacagcgggccttctgccaa
tttgttactggtgcgcctagacttccacctggtggtctggcaatgctgaatccaaagctt
acaatcgttagaaagcattcgtcgtctgcaattgctgctacttccaatggaagtggaccc
tcagaatcagcagatgatgacttgcccagtgtcatgacttgtgctaattacttgaagctt
cctccatattcttccaaggaaattatgtataagaaattgctatatgcaatctacgaaggg
caaggatcttttgatttatcatga
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