Gossypium hirsutum (upland cotton): 107921940
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Entry
107921940 CDS
T04793
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107921940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107921940
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107921940
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107921940
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107921940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
107921940
NCBI-ProteinID:
XP_016707226
UniProt:
A0A1U8KXV7
LinkDB
All DBs
Position
D04:38111630..38118051
Genome browser
AA seq
1031 aa
AA seq
DB search
MENPRRSFDRSREPGLKKPRLTEDLTPNPNIRPFSQRANPVAASGLRSRSNDSDINDLTS
GDGGAYEPQPVSHQQQHQQQQELVSQYKMALAELTFNSKPIITNLTIIAGENVHAAKAIA
ATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKCFAARLPEVFCKAYKQVDPPLHQSM
RHLFGTWKGVFPVQTLQVIEKELGFTPLVNGSSSGNTTSRTDTLSQRPPQSIHVNPKYLE
KQRLQQSIRVNLAKGIVNDMAGTLANSKEESEKCFKIPGIEVRRTRGNVTDQGLDAPWFR
ATSSVTETIPSQRNGFNVKHGSQNYSASKSVNADPRLHRTHNISGRNSGGLSSSWKNSEE
EEFMWEMHSRLSEHDAANFSNNLRKDCWTPDVSEKMDFESQLHRPQSIHDAVSRFDRETS
ADALSTEQKDKPSFGRQISTSWTDGLPAISSSRSESYSASLGGLPTGASSSLARIGMRPQ
TGSSHLGTPGFGFLANVASGPTGTSGKQCFQSVGTASPPEQSPMRQHSPSPSFPACHSHQ
QLQKLADPDYQQALSLPRADPKPSIFSGKLNVGSHRDSPQTSAPISLHPSCHYHLSQPPL
PGSVQAEPSGQTQKSLLSQISKVEAASALGSALERSNPLAIETSKLSSTSSLLAAVMKTG
ILSSTSFTGNLPTKISQDVGQISQPPLPNCPPVFTTSGLIDAAISSDATHDAIAGAPNSS
QEKVEQPLPPGPPPSSLISNAPSQTSDAESKDTNPISNLLSSLVAKGLISASKKDAASLP
SLPMPNQIQKSPGVESPSESLNKSSDIQSSSDAPRSSTMDEVSYAEPAPKCLVAPHQSTS
TEVESLIGLELRPDVIREFHSSVIGGLLDDLPHCCSLCGLRLKLQGQLDRHLEWHEMKKT
ELRGSGRALRGWYVRSDDWLAGKPGQLVLDSTDSLNKLEKTTEKAERMVPADENQCACLL
CGELFEDYFRLDSGEWMFKGAAYLAIPSKEGGVGTTDGSAANGPIVHANCMSESSVRDLG
LSGGIKVEMEE
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggagaatccgcgtagatcatttgatagatccagagaacctggtttgaaaaaaccacgg
ttaactgaagacctcactccgaaccctaatatccggcctttttctcaacgagcgaaccca
gttgccgcctctggtttgagatcccggtccaatgattccgacatcaatgatttgaccagt
ggcgacggtggagcttacgaaccacaaccagtgtcacatcagcagcaacaccagcagcag
caagagttagttagccaatataagatggcgttagctgagctcacttttaactcgaaacca
attattactaacttgacgataatcgctggcgagaatgttcatgccgccaaggccattgct
gctactgtctgcgctaatattcttgaggttcccagtgaccaaaagctgccatcactctat
cttttagatagtattgtaaagaatattgggagagactacattaaatgttttgctgccaga
ttaccggaggtgttctgcaaagcatataaacaagttgatcctcccttgcatcagagtatg
cgacatctttttggaacttggaaaggggttttccctgttcagactctccaggtgattgaa
aaggaacttggcttcactcctttggtaaatggttcatcttcaggaaacacaacatccaga
acggatacactatcacagcgtccaccacaaagtattcatgtaaacccaaagtatctagaa
aagcagcgtcttcaacaatcaatcagggtgaatttggcaaaaggtatagtcaatgatatg
gctgggactttggccaactcaaaggaggagtctgagaagtgttttaaaattcctggcata
gaagttagaagaaccagggggaatgttactgatcaggggcttgatgcgccttggtttaga
gctacaagcagtgttactgagactattcccagccagaggaatggtttcaacgttaagcat
ggatcgcaaaattactccgcatccaaatctgtgaatgctgatcctcgtttacaccgaaca
cacaatatttctggtagaaacagcggtgggttgtctagcagctggaaaaactctgaggag
gaggagtttatgtgggagatgcactctaggttgtctgaacatgatgcagccaacttctct
aataacttgaggaaagattgttggactcctgatgtttcagaaaaaatggattttgaaagt
cagctccacagacctcaaagcattcatgatgcggtgtcaaggtttgatagagagacttct
gctgatgcattatccactgagcagaaggacaaaccttcttttggccgtcagatttctact
tcatggacagatggtttgcctgctattagttcaagccgttctgagagctattctgctagt
cttggtgggttgcctactggtgcaagttcttccctggccaggataggaatgagaccacaa
acaggttcatcccatttgggaaccccaggctttgggtttttggcgaatgtggcatcagga
cccacaggtacttctggaaagcagtgttttcagtctgtaggaactgcatcacctcctgaa
cagtctcctatgcgccagcattcaccttcaccttcatttcctgcatgccactcccatcaa
cagctacagaaattggctgatccagattatcagcaagctctttccctgcctcgggctgat
cccaaaccatctattttttcaggaaagttgaatgttgggtctcatagagactctcctcag
acttctgccccgatttctttgcatcctagctgtcattatcacctttcacagccaccccta
ccaggctctgtgcaggctgaaccttctggtcagactcagaagtctcttctgtctcagatc
tccaaagtagaagcagcctcagcacttggaagtgcattggagcgttctaatccacttgct
attgaaacttcaaaactatcaagtactagtagtctattagctgctgtaatgaagactgga
atcctctccagcacttcatttactggcaaccttccaactaagatttctcaagatgttggg
caaatttcacagcctcctctcccaaattgtcctcctgttttcacaacctcaggcttgatt
gacgctgcaatttcatcagatgcaactcatgatgcaatagcaggtgctccgaatagttcc
caggaaaaagtagaacagccactgcctcctggaccaccaccttcatctcttattagtaat
gccccatcgcaaacttctgatgctgaaagcaaggatacaaatccaatatctaacctcctg
agctcattagttgcaaaaggtttgatatctgcatcaaagaaggatgctgcatctctccca
tctcttccgatgcccaaccaaatacagaagagcccaggagtcgagagtccaagtgaatca
ctgaacaagagttcggacattcagagttcatctgatgctcctcgatcctccacaatggat
gaggtatcatatgctgaacctgctccaaaatgtttagttgccccacatcagtccacctca
acagaagtagaaagcttgataggattagaactcaggccagatgtaatcagagaatttcat
tcatctgtgatcggtggattgttggatgaccttccacattgttgcagcttatgtggtctt
cgacttaagcttcagggacagcttgatagacacttagagtggcatgaaatgaaaaagact
gaattaagaggctctggtagggcattgaggggatggtatgtgaggtcagatgattggctt
gctggaaagcctgggcaattggtattggattccactgattctctgaacaagttggaaaag
acaacagaaaaggctgagcgtatggtgcctgcagatgaaaatcagtgtgcatgcttgtta
tgcggcgagctatttgaagattattttaggctggacagtggtgaatggatgtttaaggga
gcagcatacttggctatcccatcaaaggagggtggggtgggaactactgatgggagtgca
gccaatggccccattgtgcatgcaaattgcatgtcagaaagttcagttcgggacttggga
ctgtctggtggtattaaagtggaaatggaggaataa
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integrated database retrieval system
