Gossypium hirsutum (upland cotton): 107921981
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Entry
107921981 CDS
T04793
Name
(RefSeq) nuclear-pore anchor isoform X1
KO
K09291
nucleoprotein TPR
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107921981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107921981
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107921981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
XLF_CC
Peptidase_S66
Motif
Other DBs
NCBI-GeneID:
107921981
NCBI-ProteinID:
XP_016707266
UniProt:
A0A1U8KXZ6
LinkDB
All DBs
Position
D01:complement(14893296..14923465)
Genome browser
AA seq
2086 aa
AA seq
DB search
MPLFISDDELSRLSNDAAAVAERADAFIRELYGELETAKAKADADAITAEQTCSLLEQKF
LSISGELSDLQSQNAQLQSSLDERHADLAQAQAQKHQLQIQTIGKDGEIERLTTEVSELH
KSKRQLLEMIEQKDSEIADKNATIKAYLDKIVNLTDNSAHKEARLSETEAELVRVQATCT
RLSQEKELIERHNAWLNEELTAKVDNLTQIRRTHAELEADMSTRLADVEKQYNECSSSLN
WHKERTKELETKLTSLQEELCSSKEVATSNEERFSAELSIANKLVELYKESSEEWSKKAG
ELEGAIKALEMHLGQVQDDYKDRLEKEASAKKQVEKEMADLKEELEKCKAEIEAGRKANE
MNLLPLGNFTSETWISSYDANDMVEDNHALVPKIPVGVSGTALAASLIRDGWSLAKMYAK
YQEAVDALRHEQLGRKESESILQRVLREIEEKAVVIMDERAEHERLLEAYTVINQKLQNF
TSDRASLEKAIQELKVDLRRHERDNSLAQKEIADLQKQVTVLLKECRDIQLRCGSLGQDF
PGGDATVAAADMSLEPNADKVISELTFKDINGLVEQNVQLRSLVRDLSDQIESKEMEFKE
KLELELKKQTDEAASKVAVVLQRAEEQGRMIESLHTSVAMYKKLYEEEHKLHLSYSPAAE
AAPDTGRRDLLLLLEGSQEASKKAQEKTTERLRCLEEDLAKARGEIISLRSERDKLALES
NFAREKLESVMKEAEHERDKINGVLARNVEFSQLIIDYQKKLRESSESLNAAEECSRKLT
MEVSILKQEKDMLANAEKRACDEVRSLSERVYRLQASLDTIQSAEEVREETRALERRKQE
EYVKRIEKEWAEAKKQVQEERDNVRTLISDREQTLKNAMKQVEEMGKELANALHARAAAE
ARATTSEARLADLEKNLKSSDAKILALDGGTPSAFSTNEATELPMTNEEIEKLKEEAKVN
RDHMLQYKNIAQANEDALKQMELAHENFKIEAEKLKKSLEAELVSLRERVSELENESSLK
SEEVASATAGKEEALSSVLAEITSLKEETAVKSSQIMALEIQISSMKENLENEHEKWRAA
QANYERQVILQSETIQELTKTSQELALLQEEASELRKLADAHKSENAELKARWEMEKSVL
EESRKEAEKKYDELNEQNKILHSRIEAMHIQFAEKDRGSALAESSVPDSHGDSGLQNVIN
YLRRTKQIAETEISLLKQEKLRLQSQLENALKAEENAKATLNAERANSRAVLMTEDEIKS
LQHQIREMNLLRESNMQLREENKHNFEECQKLREVAHKHKIESEALESQLMERQFEVEAS
KKEIEKHLTEREILEKRVSELLERCRNIDVEDYNRLKNDVLQKEENLKEKDAQIEEITNL
LCKKQDIISKLEQDLANSKLELNEKDKKLNDILQQEANLKSDIEKQKKLVVQFKRRAESF
AKEKEQLSRENLKLVEELKQGRRSGSDITGDQVMKEKEEKDTRIQILEKTVERQREELKK
EKDEHQNEKAKRIKCERTIMEAVRKTEKGKTTVLGELEKYQLSVKRISEELEKLKHAEGN
LPQGTSVVQLLSGTISDDHASSYLSAAEDFEKVARSILNELGTGSISGDVPAVDNSAPVL
TVSGTVVPDQGPVIASSTVPVTSHQQPAKTSEERRSILPKTNTDTRKTGRRLVRPRFVKP
EEPQGDVEMSEAMSHDVDAQGTLTSQNQQSVRKRLASATSELSEDLPVPGETSTDVVVPA
LKKSKGPDSGQEAAEGQAAALSENVGCPQVTDEAYDNVGDETQGSNEELVDVEKEEADTM
EENLEESKEPQVDGTNEVGLQENKNDEILDKPSGNEVVADEDSKNPAEQDNLQPVLETES
EREEGELVPEVAADTEGGNDAHNVVGSSEVGDRQAELVSSPLASPSRVDDEALVTAAEGD
NSPDAVNDEKNEEGYIGEESVAEGSEKSNDGNEQSVVETDPMPEAAAAAVATSGTNESGT
TSGTPEGEVSKNIGSSSGAAAAEAEDVKQMSPISGTGSGSGSSATSTLVNLQERARERAM
LRQAGVLGSTTSGRGRGRVAVRARGARGRSARGGRAGGGPQNSDQQ
NT seq
6261 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcttcatctccgacgatgagctgtcgcggctctccaatgatgccgcagcggtg
gcggagagggccgatgccttcataagggagctatacggagagctggagacggcgaaggcc
aaggccgatgccgacgccatcactgccgagcaaacctgctcacttctcgagcagaagttc
ctctccatctctggggagttgtcggacctccagtctcaaaacgcacagcttcaatcttct
ctggatgagagacacgccgacctcgcccaggctcaggctcagaagcatcaactccaaatc
caaaccattggaaaagatggagagattgagaggttaacgacggaggtgtcggagctacat
aagtcgaagaggcagttgcttgagatgattgaacagaaagattcggagattgctgataag
aacgctactattaaggcctatcttgataagattgttaacttgaccgacaactctgcccac
aaagaggctcgattaagtgaaaccgaggctgagttggttcgagtacaggctacttgcaca
cgtctttctcaggaaaaggagcttatcgagaggcacaatgcttggcttaacgaggagttg
actgccaaagttgacaatcttactcagattcgtagaacacacgctgaacttgaagctgat
atgtctactaggcttgctgatgtcgagaagcaatacaatgaatgctccagctccttaaat
tggcacaaggaaagaaccaaggaactagaaactaagctgacatctctacaggaggaattg
tgctcatcgaaagaggttgctacatccaatgaggagaggttctctgctgaactatcaatt
gcaaataagcttgttgagttatataaggaaagttcagaggaatggtccaaaaaggctggg
gagcttgagggagctataaaagctttagaaatgcaccttggtcaagttcaagatgattac
aaagataggcttgagaaggaagcatctgccaagaaacaggttgaaaaggagatggcggat
ctgaaagaggaacttgagaagtgcaaagctgaaatcgaagctggtaggaaagcgaatgag
atgaatctacttccacttggcaattttacatcagaaacatggattagttcatatgatgct
aatgacatggttgaggataatcatgcgcttgtcccaaagatcccagttggggtttctgga
acggcactagctgcttctcttatccgtgatggctggagtctggctaaaatgtatgcaaaa
tatcaagaggctgttgatgctcttcgacatgagcaattgggaaggaaggaatctgaatca
atattgcaacgggtgctacgcgaaatagaagagaaagcagtagtcattatggatgaaaga
gctgagcatgagagattgcttgaggcatacactgtgatcaaccaaaaattgcagaatttc
acatcagatcgcgcaagtctagagaaagcaatacaggaattgaaggttgatttgaggagg
catgaacgagacaattccttggctcaaaaggagattgctgatcttcaaaagcaggtgacg
gttcttcttaaggagtgccgtgacatacaactacgttgtggatctcttgggcaagatttt
ccaggtggtgatgcaactgttgctgctgctgatatgagtctggagcctaatgctgacaaa
gttatatcagaattgacattcaaggatataaatggcttagttgagcagaatgtccaactt
aggagccttgtgcgtgatctttctgatcagatcgaaagtaaagagatggaattcaaggaa
aaactggagttggagctgaaaaaacaaactgatgaagcggcatcgaaagttgctgtagtg
ttacaaagagctgaagagcaggggcgcatgattgaatcactgcatacctctgttgcaatg
tacaaaaagttatatgaggaggaacataagcttcatctgtcttattcccctgcagcagaa
gccgctccagatactggaaggagggatctcttgcttcttcttgaaggttcacaggaagct
agtaagaaagcacaagaaaaaaccactgaacgtttaagatgtcttgaagaggatctagct
aaggccaggggcgagatcatatctttacggtcagagcgtgacaagttggctcttgaatcg
aattttgctagagaaaaacttgagagtgtcatgaaagaagctgagcatgagagggataaa
atcaatggtgttctggcaagaaatgtggagttctcgcagttgattattgactaccaaaag
aagctacgtgaaagttctgaatctttaaatgctgctgaggagtgttctcggaaattgaca
atggaggtgtctatattgaagcaagaaaaagatatgttagcaaatgctgaaaagagagca
tgtgatgaagttcgcagcttgtcagagagagtttatcgtctgcaggctagtttggatacc
atacagagtgcagaggaagttcgtgaggaaacaagagctttggagagaagaaagcaagaa
gagtatgttaaaagaatagagaaagaatgggctgaagctaagaagcaggtgcaagaagag
agggataatgttcgtactctcatatctgaccgtgagcagactctgaaaaatgctatgaaa
caagtcgaagaaatgggaaaagaactggctaatgctttgcatgctcgtgctgctgctgag
gcgagggctaccacttctgaggccagacttgctgatctggagaaaaatcttaaatcttct
gatgctaagattttggcactagatggtggtacaccatccgctttttcaacaaatgaggcg
acagaactgccaatgacaaacgaagagatagagaaactaaaggaggaagcaaaagttaac
agggatcacatgctacagtataagaacatagcacaggcaaatgaagatgcattgaagcaa
atggaactggcacatgaaaatttcaagattgaggcggaaaagttgaagaaatctttagaa
gcggagcttgtttcacttagagagagggtttctgaacttgagaatgaatcttctttgaaa
tccgaggaagtagcctctgcaactgcaggaaaggaagaggctctctcgtctgtattagca
gaaattacaagtttaaaagaggaaactgcagtcaaaagttctcaaattatggcattggag
attcaaatttcttctatgaaagaaaacctggagaacgaacatgagaagtggcgtgcagct
caagccaattatgaaagacaggttattctacaatcagagacaattcaggagttgactaaa
acttcacaagagttggctttactgcaagaggaagcatctgagttgcgtaaactggccgat
gcacataaaagtgaaaatgctgaacttaaggctaggtgggagatggagaaatcagttctt
gaggaatcaaggaaagaagctgagaaaaaatatgatgaacttaatgaacagaacaagata
ttgcacagccggattgaagctatgcatattcagtttgctgagaaagatcgtggttctgca
cttgctgaaagttctgttccagattcacatggtgattctggtttgcagaatgtcatcaat
tacctccgacggacaaaacaaatagcagaaacagagatatctttattgaagcaggagaag
ctacggttgcaatcacaacttgagaatgctcttaaggcagaagaaaatgccaaagccaca
cttaatgctgagcgtgccaattcaagagcagtgttgatgacagaggatgagatcaagtct
ttacagcaccagatcagggaaatgaatttactccgtgaaagcaacatgcagcttagagag
gagaacaagcacaattttgaggaatgccagaaattacgcgaggtggctcataaacataag
attgaatctgaagctctagagagccagctgatggagaggcaatttgaggttgaagcttct
aaaaaggaaattgaaaagcatctgacagagagagagatcttggaaaagagggtctctgag
ttacttgagagatgtagaaacattgatgtggaagactataaccgtctgaaaaatgatgtt
ctacagaaggaggaaaacttgaaagagaaggacgctcagattgaggagattacaaacctt
ctgtgtaagaagcaggatattatatcaaaattggaacaagatcttgcaaacagcaagttg
gaactcaatgagaaggataagaagttaaatgatattttgcagcaagaggcaaatttaaag
tcagacattgagaagcagaagaagcttgtcgttcaatttaagaggagagctgagagtttc
gcaaaagaaaaggagcaattgagcagagaaaatttgaaactggtggaggaattgaaacaa
ggtagaaggtccggtagtgatattactggtgaccaggtcatgaaggaaaaagaggagaaa
gacactagaatacagattctggagaaaactgttgagagacaaagagaagagttgaagaaa
gagaaggatgaacatcagaatgagaaagcaaaacgtatcaagtgtgaacggactattatg
gaagcagtcaggaaaactgaaaagggaaagacaaccgttttaggtgagcttgagaagtat
caactctcggtgaagcgaatctcagaagaactagaaaagctcaaacatgctgagggcaat
cttcctcagggtacctcagtggttcagcttctttctggcaccatctctgatgatcatgct
tcatcatatctatctgctgcagaagattttgagaaagtagcacgttcaattctaaatgag
cttggaactggctccatatctggagatgttcctgcagttgacaattctgcaccagtctta
acagtttcaggcacagtagttccggatcagggtcccgttattgcatcctcaacagttcct
gtaacaagtcatcagcaaccagccaaaacatctgaagagaggagatctattttacctaaa
accaatactgacactcgtaaaacagggaggaggcttgttcgcccacgttttgtcaaaccc
gaagagccacagggtgatgtggagatgtcagaagctatgtcacacgatgttgatgctcaa
ggaactctcacttcacaaaaccaacaatcagttcgcaaacgtctggcttctgctacatct
gagttgagtgaggatttaccagttcccggggagaccagcacggatgtggttgtacctgct
cttaagaaatcaaagggtccagattctggacaagaggctgctgaaggtcaagctgctgca
ctctcagaaaatgttggttgtccacaagtaacagacgaagcttatgataatgttggtgat
gaaactcaaggttcaaatgaggagcttgttgatgttgagaaggaagaggctgacacaatg
gaggaaaatcttgaagagtcaaaagaaccccaggtagatggcacgaatgaggttggattg
caggaaaataagaacgatgagatcttggataaaccaagtggaaacgaggtggtagctgat
gaagattcaaagaatccagctgagcaagataatctacagcccgtgctagaaactgagagt
gagagagaagaaggagagctggtccctgaggtagcagcagatactgaaggaggtaatgat
gcgcacaatgtggtgggatcctctgaggttggcgaccgtcaggcagagctagtttcatct
cctctggcttcaccttcaagggttgatgatgaagctctagttaccgcagcagaaggcgat
aactctcctgatgctgtaaatgatgagaagaatgaggaaggttatataggtgaagagagt
gttgccgaaggatctgaaaagtcgaatgatggtaatgagcagagtgtagtggagacggat
ccaatgcctgaagccgctgccgccgctgttgctacctctggcactaatgagagtggcaca
acaagtggtacacccgagggtgaggtctcaaaaaacataggtagttcaagcggtgcagct
gcagcagaagcagaggatgtgaagcagatgtctcccataagtgggactgggagcgggagt
ggaagtagtgcaacctcaacgttggtaaatcttcaagagagagccagagaaagagccatg
ttaagacaggcaggagtactgggttctactacttcaggtagaggtcgtggaagggttgca
gtgcgtgctcgaggtgctagggggcgcagtgcgcgtggtggacgagcaggtgggggacca
caaaattctgatcaacagtga
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integrated database retrieval system
