Gossypium hirsutum (upland cotton): 107922126
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Entry
107922126 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107922126 isoform X1
KO
K06100
symplekin
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107922126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107922126
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107922126
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107922126
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107922126
U7-dependent histone pre-mRNA processing factors
107922126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
107922126
NCBI-ProteinID:
XP_016707466
UniProt:
A0A1U8KYH8
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Position
D01:complement(23363235..23382094)
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AA seq
1336 aa
AA seq
DB search
MNVAGSRDQALSLLTAALNHSDLAVKLSSLKQAKDIISSLDSSSAAELFPYLSDLQRSPH
SLVRGFLVEIIEDIGLKSIEHSTVLVPVLVTFLRDVDSNVVKQAIVSGINFFCSVLEELT
LQFQQHGKVDQWLQELWMWMVRFKEGVFSIALQPGPVGIKLLALKFLEMQVLLFTSDNVN
SEKYIEATRGSRRTFNISWLSGGHPILDPVAVTSDANRTLYILLDMLQSASSLPGSVTIT
IVNCLAAIARRRPLHYGTVLSALLDFNPNFDTVRECHKASIQYSLRTAFLGFLRCTNPAI
VESRDRLLRALRAMNAGDAADQVIRQVEKMIKNSERASREIQSVRDDQASSQAYVLGDVT
KKRSMPQDNEEPTHNFEMASKRIRSGPNSHSMPPTQINNSGQDFSSVNGGSPSFPLSDDN
LTPVEQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVITNMRHLPKSPPLTKVGTL
PTIQQAVHVNSRAQVLPPPASTNSLHTPVSTPQLPFTSAATISSSISDTAAVNNFAADSK
RDPRRDPRRLDPRRAAVSVGMSCSPVLEGTGAAVPDFDCSISNKPLSVPAVENPSLRPMS
NIQSNDNTMEGPSITSVEQPAPEGDVVGGAEDIVHILEVKTSSNHAVSPYVVDVDSTEMK
ADAEIKHETEESSFPESDQNFQASITVSSLDETGQDLPMPPLYVELTEELERSVIKSAVQ
QIAESYLHLHWSDCNEMRMALLARLVGQIDADDDIVVMLGKQIVVDYRQQKGHDIVLQVL
YHLYSLTVSDSVDNSSYSAVLYEKFLLAVSKSLLDTLPASDKSFSRLLGEVPFLPDSALK
LLDDLCSSDVFDVTGKEVRDAERVTQGLGVVWSLILGRPNNRQACLGIALKCAVHSQDDI
RGKAIRLVANKLYQLSYISREIEQFATNMLLSAVDQRTAGAESLKSGSIDERGDKVVGSG
DTSTSSSLLSELRTSGIDSSNTESTSNSASVVSFPEAQRLISLFFALCTKKPSLLQLSFD
IYGGAPKIVKQAFHRHIPIVIRALGQSDSQLLQIISDPPPGSENLLTLVLQILTQETTPS
PDLVATVKHLYETKLKDATILIPMLCSLSKNEVLPIFPRLVDLPLEKFQLALAHVLQGSA
HTGPALTPAEVLVAIHDIVPDKGGPPLKKITDACSACFEQRTVFTQQVLAKALNQMVDQI
PLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQIWRMPKLWVGFLKCVVQTQPHSFPV
LLQLPPPQLESTLNKYGSLRSSLAAYASQPTIKGSLPRATLAVLGLANESHMQQQQPHMS
NLHSSDTSSVQGATST
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttgcaggttctagggaccaagccctttctctgctcactgccgcgctcaaccac
tctgatttggcggtgaagctttcgtctcttaaacaggccaaggacattatttcctctctc
gattcttcttcggccgccgaactcttcccctacctttccgacctccagcgttctcctcat
agcctcgttaggggatttcttgtcgagataattgaagatattggattaaaatccatagag
cattcgactgtacttgtaccggttttagtaacgtttttgagggatgttgactccaatgtt
gtgaaacaagccattgttagtggcataaatttcttctgcagtgttttggaagaactgaca
ttacagtttcagcagcacggtaaagttgatcagtggcttcaagaactatggatgtggatg
gttagattcaaggaaggtgtgttttccattgcattgcagcctggtccagttgggataaag
ttgctggctctgaaatttttggagatgcaggtcttactttttacatctgacaacgttaat
tctgaaaaatacattgaagctaccagaggaagtagacggacttttaatatatcatggcta
agtggtggtcatcctattttggatcccgttgctgtaacatcagatgcaaacaggacactt
tatattttacttgacatgttgcaatcagctagtagtctccctgggtccgtaacaatcact
attgtcaattgtcttgctgccatagcaaggaggagacccctccactatggcactgttctt
tctgcactactcgattttaatccaaactttgacacggtgagggaatgccataaagctagt
attcaatactccttaagaactgcatttttgggattcctgaggtgtactaatccagctatt
gtagagtctagggacagattgcttagagctctacgagcaatgaacgcaggggatgctgct
gatcaagtcatcagacaggttgagaagatgataaaaaatagtgagcgggcttcaagggaa
attcagtctgtcagggatgatcaagcatcaagccaagcatatgttttaggggatgtcaca
aagaaaagatctatgcctcaggataatgaagaaccaacacataattttgagatggcctct
aagcgtattcgctctggacccaattcccactcaatgccacccactcaaataaataattct
gggcaagatttttcttctgtcaatggagggtctcccagttttcctctttcggatgataat
ttaactcctgttgagcaaatgatagcaatgattggtgctttacttgctgaaggagaaaga
ggtgctgaatctcttgaaattcttatttcaaaaattcatcctgacctgctggcagatatt
gtcatcacaaatatgaggcacttgcctaaaagtcctccattaacaaaggtcgggacattg
cctacaattcagcaagcggtacatgtaaatagtcgggctcaagttctgccacctcctgct
tcaacaaattccttgcacactcccgtttcaacaccacagttgccctttacttcagctgct
acaatcagttcatcaatatccgatacagctgcagtcaacaattttgctgcagattctaaa
cgcgacccaagaagggatcctcgtcgcctagatccacgacgggctgctgtttctgttgga
atgtcatgctcacctgttcttgagggcactggtgctgcagtgcctgactttgattgttct
atttctaataagcctctttcagttccagctgttgagaacccttctttgcgcccgatgtct
aacattcaaagcaatgataacacaatggaaggtccatcaattactagtgttgagcaacca
gctcctgaaggggatgttgtgggtggtgcggaagacattgttcacattctagaagtcaag
acttcctccaatcatgcagtttctccttatgtggttgatgtagattcaactgaaatgaag
gcagatgctgaaattaaacatgagactgaagaatcatcttttccagagtctgatcagaat
ttccaggcttctattaccgtatcttctttagatgagactggtcaggatttacccatgcca
cctctatatgttgagctaactgaggagctggaaagaagtgtgataaaatcagcagttcaa
cagatcgctgagtcatacctgcatcttcattggtcagattgtaatgaaatgcgcatggcg
ttacttgcccggcttgttggtcagattgatgctgatgatgacattgttgtcatgttggga
aaacaaattgttgtggattaccgacaacaaaagggtcacgacattgtattgcaagttctc
taccatctatattctctcacagtttcagattcagttgacaactcttcatattctgctgtt
ctttatgaaaaattcctcctggcagtgtccaaatctttgctggacacacttccagcctca
gacaagtcatttagtaggcttcttggtgaagttccgtttctgcctgactcagccttgaaa
cttttagatgatctctgctcttctgatgtgtttgatgttactgggaaagaggttcgtgac
gctgagcgtgtgacacagggccttggtgtggtgtggagtttaattttgggacgtccaaat
aatcggcaagcctgcttaggtatagcattgaagtgtgctgttcattctcaagatgacatt
cgtgggaaagctatccggctggtagcaaacaaactttatcagctgagctacatttcaagg
gaaattgagcaatttgcaacaaatatgttgctgtctgctgtggatcagagaaccgcaggt
gcagagtctttgaagtctgggtctattgatgaaagaggcgacaaggtggttggaagcggg
gacacatctactagtagctctctactttcagagctccgaacttctggaattgactcctcc
aatacggaatcaacaagtaatagtgcttcagtagtgtcatttcctgaagcccaaagactc
atttctctgttttttgccttatgcactaagaagcctagtcttcttcaactctcatttgat
atttatgggggagcgccaaaaattgtaaagcaggcttttcatcgccatatacctattgta
ataagagccttaggtcagtctgattctcagttgcttcaaataatatccgacccaccccca
ggaagtgaaaatcttttgacactggtgctgcaaatactgacccaagagacaactccttct
cctgatttagttgccactgtgaagcatttatatgagactaagctgaaggatgctaccatc
cttattccaatgttatgttcactttccaagaatgaggtgttacctattttccctcggctt
gttgaccttccactggaaaagttccagcttgcgcttgctcacgtattgcagggttcagct
cacactggtcctgccttgactcctgctgaagtgttggtagccatccatgacattgttcct
gataaaggtggtcctccactgaaaaagataacagatgcttgctcagcttgttttgagcag
cgcacggttttcactcagcaggtcttagcaaaggccttgaatcagatggttgatcagatc
cctcttccgttacttttcatgagaacagttattcaggcaattgatgcttttcctaccctg
gttgattttgtcatggaaatcctatccaaacttgtgagtaaacagatctggagaatgccg
aaattgtgggttggattcttgaagtgtgtggttcagacacaacctcattcctttcctgtt
ttattacagttgcctccgccacagcttgaaagtacactgaataaatatggtagtctcaga
agttcccttgctgcttacgcaagccagccaactataaaaggttcactgcctagagcaacg
cttgcggttctcggtcttgcgaatgagtcgcatatgcagcagcagcaaccacatatgtca
aatttgcattcttcggacacttcttcagttcagggggcaacatcaacataa
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