Gossypium hirsutum (upland cotton): 107922165
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Entry
107922165 CDS
T04793
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107922165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107922165
Spliceosome [BR:
ghi03041
]
Complex B
Other components
Prp19-related factors
107922165
Complex C
107922165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
RRM_3
zf-CCCH
zf-CCCH_3
zf-CCCH_PARP12
zf-CCCH_4
zf-CCCH_10
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
107922165
NCBI-ProteinID:
XP_040935983
UniProt:
A0ABM2YZS5
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All DBs
Position
A02:complement(105082778..105086546)
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AA seq
503 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYVRGECTRGAECPYR
HEMPEAGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEAPEDESIKTLYVGGLDKRIT
EQDLRDNFYAHGEIESIKMVLDKACAFVTYTTREGAEKAAEELSSKLVIKGLRLKLMWGK
PQAPRPESETSDGSRQQAAVAHSGMLPRAVISQQQNQFQPSGPGMHDQPPPMQYFNIPPP
PQIDRAYYPSMDPQRMGALVPSKDGENKPGSDKQQAQHYSYQGMPPPPPGQYPHQHYPPY
RYMQPMPPYQQYPPYHSAMPPPRGPPQHYQHSGPSRPPPPVSGPASTSVQPPPASTSSGS
APPPPPPPPVPVPSAAASGSSQQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcacaccgattgttaagagatcatgaggcggacggctgggaacgctctgattttcct
atcatttgcgagtcatgccttggtgacaatccatatgtccgaatgactaaagctgattat
gataaggagtgcaagatttgtacacggccatttacagtctttaggtggagacctggtcgt
gatgcaaggtataagaaaactgaggtttgtcagacttgcagtaagttgaaaaatgtgtgt
caagtctgccttttagatcttgaatatggattgccagttcaagttcgggatactgctcta
agtataaactccaatgatgccattccaaagagtgatgtcaatagagagtatttcgccgag
gagcatgacaggagggcgagagctggtctagattacgaatcctcatatggcaaggtacgt
ccaaacgacactattctgaagcttcagagaacaacaccttactacaagagaaaccgagca
catatttgcagtttctatgtgcggggtgaatgtacaagaggtgctgagtgcccttatagg
catgagatgccggaagctggggagttgtcccagcaaaatataaaagaccgttactatggg
gtgaatgatccagtggcactaaagctacttaacaaggctggtgaaatgccttctttggaa
gcgcctgaggatgaaagcattaaaaccctttatgtgggagggctggataaaaggatcacc
gagcaagatttaagggataacttttatgcacatggtgaaatcgaatcgataaagatggtc
cttgacaaggcatgcgcctttgttacatacacaaccagagaaggagctgagaaggctgca
gaagagctttctagcaagctagtcataaagggtcttaggctgaagctaatgtggggtaag
ccccaagctccaaggcctgagtcagaaacctccgatggatccaggcagcaagcagcagtg
gctcatagcggaatgttgccccgggcagtaatatctcagcagcagaatcaattccagcca
tctggacctggcatgcacgaccaaccaccacctatgcagtactttaatatcccacctcca
cctcagatagatagagcctactatccatcaatggaccctcaaagaatgggtgctctggtt
ccgtctaaggatggggagaacaaacctgggtcagataaacaacaagcacaacactattct
taccaaggtatgccgccgcctccacctggacaatatcctcatcaacattatccgccatac
aggtacatgcaaccaatgccaccttatcaacagtatccaccataccattcagcaatgcct
ccacctcgaggcccacctcaacattatcaacactctggaccatcaagacctccaccacct
gtgagtggaccagcttcaacaagcgtgcaaccaccaccagcatctacttcatcaggttct
gccccgccaccaccaccaccaccaccagtgcccgtcccatctgctgctgcatctggatct
tctcagcaatga
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