Gossypium hirsutum (upland cotton): 107922266
Help
Entry
107922266 CDS
T04793
Name
(RefSeq) prolycopene isomerase, chloroplastic
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00906
Carotenoid biosynthesis
ghi01100
Metabolic pathways
ghi01110
Biosynthesis of secondary metabolites
Module
ghi_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
107922266
Enzymes [BR:
ghi01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
107922266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
FAD_oxidored
GIDA
HI0933_like
Pyr_redox_2
Thi4
GDI
FAD_binding_3
GMC_oxred_N
MCRA
Motif
Other DBs
NCBI-GeneID:
107922266
NCBI-ProteinID:
XP_016707694
UniProt:
A0A1U8L3N5
LinkDB
All DBs
Position
D01:29605495..29610430
Genome browser
AA seq
597 aa
AA seq
DB search
MSLGCYQTVLFPTEGKSDFSSWNPLKNSQLKGNKISGVKFSNFQVSQRRKCIPMKLKSLL
SVDSAVEIEGKKGVNTGSKYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGY
YQRDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGREMEVIPDPTTVHFHLPNNLSVQVH
REYSEFINELMSKFPHEKEGILKFYGECWKIFNALNSLQLKSLEEPIYLFGQFFQKPLEC
LTLAYYLPQNAGDIARKYVKDPDLLSFIDAECFIVSTVNALRTPMINAGMVLCDRHFGGI
NYPVGGVGGIAKSLAEGLIDQGSEILYKANVTNIIIDQGKAVGVKISDGREFFAQTIISN
ATRWDTFGKLLKAENLPKEEENFQKVYVKAPSFLSIHMGVKADVLPPDTDCHHFVLEDDW
TRLEEPYGSIFLSIPTVLDSSLAPKGRHILHIFTTSPLEDWEGLPPKDYEAKKELIADEI
IGRLEKKLFPGLKSSIVFKEVGTPKTHRRYLARDMGTYGPMPRQIPKGLLGMPFNTTGIS
GLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPILDAALLGLLGWLRTLA
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaggttgttatcaaaccgttctgttccctacagaagggaagtcggatttttcg
tcctggaatccattgaaaaactcacaattgaaaggtaacaagattagtggtgtcaaattc
agcaactttcaggtcagtcaaaggagaaaatgcattcctatgaaattgaaatccctgttg
agtgtagacagtgcggtggagatagagggaaagaaaggagtcaatacggggagtaaatat
gatgcaatagttatagggtcagggataggagggcttgttgcagctacacagttggctgtt
aaaggagccaaggttttggtactggagaagtatgtgattccaggagggagttctgggtat
taccagagagatggatatactttcgatgtaggatcttctgtcatgtttggattcagtgat
aaggggaatctgaatttgataactcaagcattggctgcggtcgggcgtgagatggaggtg
attcctgatccaactacagttcatttccatctaccaaataacctttccgttcaagtacat
agagaatacagtgaatttatcaatgaacttatgagtaaatttccacatgagaaggaaggg
atccttaaattttatggcgagtgttggaagatcttcaatgccttgaactcgttgcaattg
aagtccctcgaggaaccaatctaccttttcggacagttctttcagaagcctcttgaatgt
ttgacacttgcttattatttgccccaaaacgctggagatattgctcgaaagtacgtgaag
gatcccgatttgttgtctttcattgatgctgagtgtttcatagtgagtacggttaatgct
ttgcggacaccaatgatcaatgcaggcatggttctatgtgacaggcatttcggtggaatt
aattaccctgttggtggtgttggtggaatagcaaagtctttggccgaaggcctgatcgat
cagggtagtgaaatactttacaaggcaaatgtgactaacattataattgaccaagggaaa
gctgtgggagtgaaaatttcggatggaagggagttctttgcccaaaccataatatcaaat
gctactcgatgggatacatttgggaagctgttaaaagcagaaaaccttccaaaagaagaa
gaaaattttcagaaagtttatgttaaggctccatcatttctttccattcacatgggtgtt
aaggctgacgttctgcctcctgatactgattgtcatcattttgtgctcgaggatgactgg
acgagattagaggaaccatatgggagcatcttcttaagcattccaaccgttctcgattca
tcattggctccaaaagggcgtcatattcttcacatatttactacttctcctttagaagat
tgggaaggacttccaccgaaggactatgaggcgaaaaaggagctaattgctgatgaaatc
atcggaaggttggagaagaaactattcccgggactgaaatcatcaattgtttttaaggag
gtagggaccccaaagacacacagacggtacttggctcgtgacatgggtacttatggaccg
atgcctcgtcaaattcccaagggcttattagggatgccgtttaatacaacgggtattagt
ggtctttattgtgtcggtgatagctgctttccgggacaaggcgttatagcagttgctttt
tcaggcgtaatgtgtgctcatcgggttgctgctgatattgggcttgagaagaagtctcca
atattggacgctgctcttcttggattactcggttggttaaggacattggcttaa
DBGET
integrated database retrieval system
