Gossypium hirsutum (upland cotton): 107922375
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Entry
107922375 CDS
T04793
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107922375
Spliceosome [BR:
ghi03041
]
Common components
Common spliceosomal components
General mRNP proteins
107922375
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Ortholog
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GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
107922375
NCBI-ProteinID:
XP_040960451
LinkDB
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Position
D11:40058722..40065484
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AA seq
613 aa
AA seq
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MDFDEYEYLEKTVEEQEDPKKTKDGGGSEDKSEKSYRKRDGDREEEDDEGKRSSKKSRSG
RDEDDEERRDRDKDRHRSSRDRDRERERDRDKDLERRGSREREKERERERREKDKEKERD
RREKEKERERREREKEKEKEREIDRRERSSSRSRRHESDRDIERERERDRRERSSSRSRR
HESDRELERERERDRRERSSSRLRRHESERDQEREREIDIRDSRRFKDKKDAVEPEADPE
RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM
AIALSGQLLLGQPVMVKPSEAEKNLVQSNTSGAGAGGVAGPYGAVDRKLYVGNLHFNMTE
MQLRQIFEPFGPVELVQLPLDLETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTIK
VSSVTDHVVTQDATAKSADFDDDEGGGLALNAQSRALLMQKLDRSGIATSITSSLGVPLV
NGSAPNQQATLPVNGQGAFPAPVLQPIMSTTALEPIGQPSECLLLKNMFDPATETEPDFD
LDIKEDVEEECSKYGRVKHIYVDKNSGGCVYLRFDSTEAAGKAQRAMHMRWFAGRSISAL
FMQPHEYEARFKG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacgagtacgagtatttggaaaaaaccgttgaggagcaggaagatccgaag
aagacgaaagacggaggaggatcggaggataaaagcgagaaaagctataggaagagagat
ggagatagagaggaagaggatgatgagggcaagaggagcagcaagaaatcgagaagcggc
cgcgatgaggacgacgaggagaggcgagatcgggataaggaccgccatagaagcagccgc
gacagggatagggaaagggagagagatagagataaggatttagagaggaggggtagcaga
gagagggagaaggaaagggagagagaaagaagagaaaaagataaggagaaagagagggat
aggagagagaaggaaaaggagagagagaggagggaaagagagaaggaaaaggagaaagag
agggagatagaccggagagagagaagcagtagtaggtcgaggaggcacgaaagtgatcgt
gacatagagagggaacgggagagagataggagagagaggagcagtagtaggtcgaggagg
cacgagagtgatcgtgagctagagagggagcgggagagagataggagagagagaagcagt
agtaggttgaggagacacgaaagtgaacgcgatcaagagagggaacgtgaaattgacatc
agagatagcaggagatttaaggataagaaagatgcagtggagcctgaggctgatcctgag
agggaccagagaactgtttttgcttaccagatgcctctaaaagcaactgagagagatgtc
tatgaattcttctcaaaagcaggcaaggtaagggatgttcggctgatcatggatagaaat
tcaagaagatcaaagggggttgggtacattgagttttatgatgtgatgtctgtgccaatg
gcaatagcattgtctggtcaactgcttcttggtcaacctgtgatggttaaaccttcagag
gccgaaaagaatcttgttcagtccaatacttctggtgcaggcgcaggtggtgttgctgga
ccatatggagctgttgatagaaaactatatgtagggaacttgcattttaatatgacagaa
atgcagcttagacagatatttgaaccttttggacctgtggagcttgtgcaactaccactt
gaccttgagactgggcagtgcaaaggttttgggtttgtccagtttgctcaacttgaacat
gcaaaagcagctcaaagtgccttgaacgggaaactggagattgttggtcgaaccattaag
gtttcatctgttacagatcatgttgttacccaagatgctacggcaaaatctgcagacttt
gatgatgatgagggtggtggcctggctttgaacgcacaatcaagagcgttgcttatgcag
aaactggatcgctctggtattgcaacgagcattacgagctctcttggagtacccctcgtt
aatgggtctgctccaaatcaacaggcaacattacctgtcaatggccaaggggcatttcca
gcaccagttctacagccaatcatgtctactacagcccttgaacctattggacagcccagc
gagtgtttgctgttgaagaatatgtttgatcctgcaactgagacggaacctgattttgat
ttggatattaaagaggatgttgaagaagaatgcagcaaatatggcagggtgaagcatatt
tatgtggacaaaaacagtggcggttgtgtctatcttcgatttgattcgacagaagcagcg
ggtaaagctcaacgtgcaatgcacatgagatggtttgcaggcagatcaatatcagcctta
tttatgcaaccccatgaatatgaagcgaggtttaaaggttga
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