Gossypium hirsutum (upland cotton): 107922611
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Entry
107922611 CDS
T04793
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03020
RNA polymerase
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107922611
09124 Replication and repair
03420 Nucleotide excision repair
107922611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107922611
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107922611
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107922611
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107922611
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
107922611
NCBI-ProteinID:
XP_040938426
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All DBs
Position
A12:3067321..3069872
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AA seq
318 aa
AA seq
DB search
MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV
TSKDLYSSDHTVVPVDFTDNAGYDSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
PAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYTYD
DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSED
TVEADDQFGELGAHMRGG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggagggaatatcgtaccagcgattccctaaggttaaaatccgagagctgaaggatgac
tacgctaaatttgagcttcgcgataccgatgcctccatggccaatgccctccgtcgtgtt
atgatctccgaggtccccaccatcgctattgacctcgtcgaaatcgaagtcaactcctcc
gtccttaacgacgagttcattgcccatcgcctcggtctcatccctctcaccagcgaacgc
gccatgtctatgcgcttctcccgtgactgtgacgcttgcgacggtgacggtcagtgcgag
ttctgctccgttgagttccatcttcgcgccaaatgcatttccgatcaaaccctcgacgtt
accagcaaggatctctatagttccgaccatactgttgttcccgtcgatttcaccgataac
gctggctacgattccactgagcctagagggattattattgtgaagttacggcgagggcaa
gagctgaggctgagggcaattgcgaggaaagggatagggaaagatcacgccaaatggtca
cctgctgcgacagtgacttttatgtatgaacctgagattcatattaatgaggatttgatg
gaaagcttgacgcttgaagagaagctaagctttgttgagagcagtccaactaaagtcttt
gacattgacccaaatacccaacaggttgtggtggttgatccagaggcgtatacctatgac
gatgaggtgctaaagaaagctgaagctatgggaaagccaggtcttgtggagatatatgcc
aaagaagacagtttcatctttacagttgaatccactggtgcgatcaaagcttctcagttg
gttcttaatgctatagaaatcctgaaacagaagctggatgcggttcgcctgtctgaggat
actgtggaagctgatgatcagtttggtgaactaggtgcccatatgcgaggaggatga
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