Gossypium hirsutum (upland cotton): 107922941
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Entry
107922941 CDS
T04793
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107922941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107922941
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
107922941
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Paralog
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
107922941
NCBI-ProteinID:
XP_040930400
UniProt:
A0ABM2YIP0
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Position
A08:complement(63849543..63852253)
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AA seq
255 aa
AA seq
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MPILQQWLGPFLIIINGLNSLIRQYSLTFPTLLSPYPQSILPPGKQTFRLGEGEMVMSPV
VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEFLLMQVQEHNHPHIL
LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFE
TIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVIST
IPQQLSRFQFNMITT
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgcccattttacaacaatggttaggccctttcctgattattatcaatgggcttaactcc
ttaataagacaatattcattgacctttcccacccttctctctccgtacccacaatcgatt
ttgccgccggggaaacaaacgtttcgactcggagagggagagatggtaatgtcaccggtg
gttaacacgtaccctttgtccagctacacctttggtaccaaagagccgaagatggagaag
gacacgtccgtcgccgatcgccttgctcgcatgaaagtcaattacatgaaagagggcatg
agaactagcgttgaatttcttctcatgcaggtccaagaacataatcatcctcacattctt
cttctgcaaattgggaacacattctgcaaacttcctggtggacgactgaagcctggagag
aatgagattgagggtttgaaaaggaagctgaccagcaagcttggagctaattcacctgct
cttgtgccagactggcagattggtgagtgcgtggccatctggtggaggcccaactttgag
accataatgtatccatattgtcctccccacatcacaaaacctaaggaatgcaagaagctt
ttccttgtccatttgtctgagaaagagtactttgcagtaccaaaaaatttgaaacttctt
gctgtaccattgtttgagctttatgacaatgttcagagatacggacctgtaatatcaacc
attccgcagcagctctctagattccagttcaacatgattactacataa
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