Gossypium hirsutum (upland cotton): 107923065
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Entry
107923065 CDS
T04793
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107923065
09123 Folding, sorting and degradation
03018 RNA degradation
107923065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107923065
03041 Spliceosome [BR:
ghi03041
]
107923065
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107923065
mRNA degradation factors
5'-3' decay
Lsm complex
107923065
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107923065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
107923065
NCBI-ProteinID:
XP_016708763
UniProt:
A0A1U8L5V5
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All DBs
Position
A11:complement(16276834..16278591)
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AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaatccctcgcagcttcttccgtcagagttgatagataggtgcatagggtcc
aaaatatgggtgataatgaaaggggacaaggagctcgtgggtactctaagaggcttcgat
gtttacgtcaacatggtcctcgaagatgtcactgaatatgagatcaccgctgaaggaaga
cgtatcacaaagcttgatcaaattttgcttaatggaaacaacatcgccattttggtccca
ggaggctcacctgatcccgaatga
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