Gossypium hirsutum (upland cotton): 107923086
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Entry
107923086 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase TRAIP isoform X1
KO
K11985
TRAF-interacting protein [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107923086
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107923086
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107923086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-rbx1
zf-C3HC4
zf-ANAPC11
zf-C3HC4_2
Lebercilin
FANCL_C
zf-RING_11
DUF4407
zf-RING_16
PHD_NSD
RING_XB3-XBAT31
RINGv
PHD
zf_RING_Vps8
Thiamine_BP
DUF6074
Motif
Other DBs
NCBI-GeneID:
107923086
NCBI-ProteinID:
XP_016708786
UniProt:
A0A1U8L291
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All DBs
Position
A11:complement(9115994..9121305)
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AA seq
550 aa
AA seq
DB search
MINESSFSKTICSICYEDLKPIIEDLQCISICGHVFHELCLQQWFEYSSSSTKKYNCPVC
KQTCVGHNATRLYFQSVGDQTQSVCSQKLIDREEDAESLRFEVKKLQFKVSGLSESLKRH
GEKHDEINEQLCNFRDQARKEMALKNEALREKASIQQKLSSKSEELSKSVLECSRLEQRN
LALAKELAVLKLVSDFDLEQDEILKLASLGNEGNSQDVVDNLIRSLSCHKKSYKELMAKC
NLLGRGEARLQKKLEKAKSKIDKLKKRVQEMETLIEVKDNEVLRALKASKKTDSKMGDHS
DYSDAKNSSKEQQMQQPNLELSGISLKPLPSSKKENIPLDSPKAANYGREGCSSTVVIDD
EGNMGEDVYIISSPDLKCRNSENIIQESATSLPKAVSDVNMEAATMAGFSGSRTSSNIDN
ATDAAPIKPMFNIKMDTPSLPLSEQGNICFSGGLLGPDGTKRHLGKWCKLGKLLGSMPEQ
GSTKNSGDLIAVGADGRGGRIKVMRSANQSSMGDKENSVSAKRLKCGAKQNSFPSGGCLQ
IEHFFGKTHY
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacgagagctccttttccaaaactatatgttctatctgctacgaagatcttaaa
ccgatcatagaagatctccaatgcatctccatttgcggccatgtcttccacgagctctgt
ttgcaacagtggtttgagtactcttcgagttctacgaagaagtacaattgtcctgtatgc
aaacagacttgtgttgggcacaatgcgactcgtctttatttccaatcagttggagaccag
acccagtcggtttgctcccaaaagttgatcgatcgtgaggaagatgcggagtcgttacgc
tttgaagtgaagaagttgcagttcaaagtatcggggcttagcgaatccttaaaacgtcat
ggagagaaacacgatgagataaacgagcagctgtgtaatttcagagatcaggcgaggaag
gaaatggccttgaaaaacgaggccctaagagaaaaggcatccattcaacaaaagctcagt
tctaaatctgaggagcttagtaaatcagttctggaatgttcaaggctggaacaaaggaat
ttggcactagccaaggaacttgctgtactaaaactggtgtcagatttcgacctggagcaa
gacgagattttaaagttagcctcactgggtaatgaagggaatagccaagatgtagtagat
aatctgattaggtcactatcctgtcataaaaagagttacaaagaattgatggccaagtgc
aatcttcttggtagaggtgaagctcgtttgcagaagaaacttgagaaagcaaaatcaaag
atagacaaattgaaaaaaagagtccaggaaatggagaccctgattgaagtgaaagataat
gaagtcttgagggctcttaaagcttcgaagaagactgatagtaaaatgggtgaccattcc
gattattcagatgccaaaaattcttcaaaagaacagcagatgcaacaacctaacttggaa
ttgagtggaatatcacttaaacctttaccaagttcaaagaaggaaaacatccctctagat
agtcctaaggctgccaattatggtagagagggatgctcaagtactgtggttatagacgat
gagggaaacatgggtgaggatgtatacataatttcgagtcctgatttaaaatgtcgaaat
agtgagaatattattcaagagtctgctacatcactgccaaaggcagtgtctgatgttaat
atggaagctgcaactatggctggattttcagggtcgagaactagttcaaatattgataat
gctacagatgctgctcccataaagcccatgttcaacattaaaatggatactccttcgctt
ccactttctgaacaagggaatatttgtttctctggtgggctgctaggtccggatggaact
aaacggcatttagggaaatggtgcaagcttggcaaactgcttggatcaatgcctgaacaa
ggttcaactaaaaatagtggtgatttaattgctgttggtgctgatgggagaggtggtaga
attaaggttatgcgatctgcgaatcaatcttcaatgggtgataaggagaattcagttagt
gcaaagagattaaaatgtggagctaaacaaaatagtttcccttctggaggatgcttgcaa
atagagcacttctttggaaagacccattactga
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