Gossypium hirsutum (upland cotton): 107923222
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Entry
107923222 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107923222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107923222
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
107923222
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
HECT type E3
107923222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
107923222
NCBI-ProteinID:
XP_016708928
UniProt:
A0A1U8L2R1
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All DBs
Position
A01:106534235..106543713
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AA seq
1903 aa
AA seq
DB search
METRSRKRAEASSAAPSSSPSGPTTRSHKRARLSSSPSPTAVTTTTPRSRTSRAAAALMD
STTTESSSGSRCDRRPSKANQSTTSDSPNLASDRGKEKERDPSARDRDRDRDRDRANRDN
NSNNPERNLGLIMDTSLGDDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPS
SAMGSASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVP
VLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQ
SLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDYVM
EAVPLLTNLLQYHDSKVLEHASVCLTLIADAFASSPDKLDELCNHGLVTQAASLISTSNS
GGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGINGILKDILSGSGISANSSVSPA
LSRPAEQIFEIVNLANELLPPLPQGTISLPASSNMFVKGSILMKSPASSSDKQENSDENA
PKVSAREKLLNDQPELLQQFGVDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSSAEMI
QNLLSVTNISSFLAGVLAWKDPHVLVPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLV
LIGNQNATAAQASPLEKDNDSVSGTSSRSRRYRRRSGNSNPEGGSVEESKNQASLNIGSP
PNTVEIPTANSNIRAAVSACAKAFKDKYFPSDPGAVEVGVTDDLIHLKSLCMKLNAGIDD
QKTKAKGKSKASGCRLVDFSSSKEEYLIGVISEMLAELSKGDGVSTFEFIGSGVVAALLS
YFSCGYFSLERVSDVNLPKLRHQALKRLKLFISVALPSSVDEGSIAPMTVLVQKLQNALS
SVERFPVVLSHSSRSSGGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNIVMIDPLA
SLAAVEEFLWPRVQRSDNAQKPSVSVGNSDSGNTASGAVASSPSTSTPASTTRRHSSRSR
SSVNIGDVARKESSQEKSTSSSKGKGKAVLKPAQEESRGPQTRNSARRRAVLDKDTPMRP
ENGDSTSEDEELDLSPVEIDDALVIEDDDISDDEDDDHEDVLRDDSLPVCMPDKVHDVKL
GDSAEDGTTMPAASDNQTNAASGSSSRAAAVSGSDSADFRSSYGSRGAMSFAAAAMAGFG
SANGRGIRGGRDRQGRPQFGNSNEPPKLIFTVGSKQLNRQLTIYQAIQRQLVLDEDDDER
YGGSDFTSTDGRGMWSGIYTITYQRADTQADRTSVGGSGSAPASKSTKSCSPSSNSDSQT
HRMSLLDGILQGELPCDLERSNPTYTILTLLYVLEGLNQLAPRLRAQIVSDDFAEGKNLN
LDELSTPGSRVPYEEFINGKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETR
RQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNHILDSAAKVM
EMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLGMWRSNSTWDKSIMEIDGD
EEKNEKTAGSVGGDIVQAPLGLFPRPWRPNADASEGSQFFKVIKYFRLLGRVMAKALQDG
RLLDLPLSTPFYKLVLGQELDLYDILSFDGEFGKILQELHFLVCRKQYLESTGGESSAAV
DELRFRGTPIEDLCLDFTLPGYPEYILKPGDGTVDINNLEEYISFVVDATVKAGIIRQME
AFRAGFNQVFDVASLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYTAKSPAVVNLL
EIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSAIAATSNGSGPSESA
DDDLPSVMTCANYLKLPPYSSKEIMYKKLLYAINEGQGSFDLS
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccggaagcgggcggaggcctcctcagctgccccttcatcttccccc
tctggtcctaccactcgttctcacaaacgcgctcgtctctcttcttccccatcccccacc
gctgtaactaccacaacgcctcgctctcgcacttcccgcgctgccgctgctttaatggac
tccaccacaaccgaatcttcctctggttcccgctgcgatcgccgtcccagcaaagctaat
cagtccacgacaagtgacagtccaaatctcgcctccgataggggcaaagaaaaggaacgt
gatccaagtgctcgcgatagagatagagatagggatagggatagggcaaatagagacaac
aattctaacaaccctgagaggaatttagggttaattatggatacctctttaggcgatgac
gatgataatgatagcgaaggcggtgtagggattttacaccagaatctgacgtcagcaagc
agcgcgttacaaggcttgttgaggaagcttggtgccgggcttgatgatttgctgccgtca
tcggctatgggttctgcatcttcatcccatcagagcgggaggttgaagaagattctgtct
gggttgcgtgctgatggagaggaagggaagcaagtggaggcgttgacgcagctctgcgag
atgctttcaattgggactgaggagtccttgagcacgttttctgtggattcatttgttccc
gtgctcgttggattgcttaatcatgagagtaatcctgatattatgcttcttgcagcaagg
gcgctgacccatttgtgtgatgttttgccttcttcatgtgctgctgtggtgcattatggt
gctgtttcgtgtttttgtgccaggttgctcactatagagtatatggacttggctgaacag
tctctccaagctttgaagaagatatctcaggaacacccaactgcctgtttgcgagctggt
gctctcatggcagttctttcttacttggatttcttctccactggggttcagcgagtggca
ctatctactgctgcaaatatgtgcaagaaactcccttcagatgcatctgattatgtcatg
gaagctgtacctctattaacaaatctgttgcagtatcatgattcaaaggtgctggagcat
gcttctgtttgtttgactctcatcgccgatgcctttgcatcatccccggataaattagat
gagctatgcaatcatggactggttactcaagctgcatctctcatttctacaagtaactct
ggaggtgggcaggcatcattaagcacaccgacatatacgggcttaattcgactgctttca
acatgtgcaagtgggtctcctttaggagctaaaactttacttctgcttgggataaatggc
atacttaaagatatactatcaggttctggcatttctgccaactcatcggtttcgccggca
ttaagcagaccagcagagcagatttttgaaattgtcaatctggcaaatgaacttcttcct
ccgttgccacaaggaacaatttccctccctgccagctctaatatgtttgtcaaaggatct
attttgatgaagtctcctgctagcagctctgacaagcaagaaaattctgatgaaaatgct
cccaaagtttcagcccgagagaaattattgaatgatcaacctgaacttcttcagcagttt
ggagttgatctgcttcctgttctcatacagatctatggttccagcgtcaatggcccagtt
cgccataaatgtctctcggttattggaaaactaatgtacttcagcagtgcagagatgatt
cagaatttattgagtgtaacaaacatatcaagcttcttggctggtgttttagcatggaaa
gatccacatgtcttggttccttccctccaaattgctgagatcctcatggaaaagcttcct
ggaaccttctccaaaatgtttgtcagagagggtgttgttcatgctgtagatcagcttgta
ttaattggtaaccaaaatgccactgctgcccaagcatctcctcttgagaaggataatgat
tctgtatctggaacgtcatcacgttccaggcgttacagacgacgcagtggtaactctaat
cctgaaggaggttctgtggaggagtccaaaaatcaggcctctttaaatattggctcacct
cctaatactgttgaaattcctacggccaattccaatattcgtgctgcagtaagtgcatgt
gctaaagcatttaaagataagtatttcccctctgatcctggggctgttgaagttggagta
acagatgatcttatacacttaaaaagtctctgcatgaaattaaatgctggcattgatgat
caaaagactaaggcaaaaggaaaatctaaagcttcagggtgtcggttggttgatttttct
tctagcaaagaagagtatttgattggtgtgatttctgagatgctagcagaactaagcaag
ggggatggtgtatccacgtttgagtttattggtagtggtgttgtggcggccttgttaagc
tatttttcttgtgggtacttctcgctggagagagtttctgatgtaaacctgcccaagctt
cgccaccaagcccttaaacgattaaaattatttattagtgtggcacttccttcaagtgtt
gatgaaggaagtattgctcctatgactgtcctggttcagaagcttcaaaatgctttatca
tctgtagagcgtttccctgtagttcttagccattcatctaggtcttctggtgggagtgca
cgcctctcttctggattaagtgcattgtctcagccttttaagttgcggctttgtcgagcc
caaggagagaagtctcttcgtgactattcttcaaatattgtgatgattgatccattagca
agtctagcagctgttgaagaatttctttggccacgagttcaacgtagtgacaatgctcaa
aaaccctctgtgtctgtaggaaattctgactctgggaacacggccagtggggctgttgct
tcttctccatctacctcaactcctgcttcgaccactcgtcgtcattcttcaaggtccaga
tcatctgttaatattggagatgttgccagaaaggaatcatcacaggagaaaagcacaagt
tcgtcaaagggaaaaggtaaggctgttttgaaacctgctcaagaggagtcaagagggcct
caaacaagaaattctgctcgtagaagagctgttctggataaagatactccaatgagacct
gaaaatggtgactctacgtctgaggatgaagaattggatttgtctcctgtggagattgat
gatgctttggtgattgaagatgatgatatttctgatgatgaagatgatgatcatgaagac
gtgcttagagatgattcccttcctgtttgcatgccagataaagtacacgatgttaaattg
ggcgattcagctgaagatggcacaaccatgccagcagcaagtgataaccaaactaatgct
gcttctggatcaagcagcagagctgctgctgttagtggttcagactctgctgattttagg
agtagttatggctcaaggggtgcaatgtcgtttgctgctgctgccatggctgggtttgga
tctgccaatggtagaggtattagaggaggtagagatcggcaaggacgtcctcagtttggg
aattctaatgagcctccaaagttgatttttactgttggtagtaagcagctcaaccggcag
ttgaccatctatcaggccattcaaagacagcttgtgttggatgaggacgatgatgagaga
tatggcggtagtgatttcacatctaccgacggaagaggaatgtggagtggtatctacaca
ataacttatcagagggcagacacccaagctgaccgaacatcagtagggggttcaggttct
gccccagcatctaaatccactaaatcgtgttctcccagttccaactctgattcccaaact
catagaatgtcactattagatggcatcttgcaaggggaacttccttgtgatctagaaaga
tctaatcctacttacactatcttgacacttttgtatgtgttagaggggttgaatcagctg
gcacctcgtttgagagctcagatagtttctgacgattttgctgaaggaaaaaatttaaat
ctggatgagttgagtacccctggttctagagttccttatgaggaatttattaatggtaaa
ctcactccaaaactggctcggcaaatacaggatgcccttgctctttgcagtggaagtctc
ccttcctggtgttaccagttgacaaaggcatgcccctttttatttccttttgagacacga
aggcagtacttctattcaactgcctttgggttgtctcgtgcgttatatcgtctgcagcag
cagcagggtgctgatggccatggatcaactaatgagagagaggtgagggttgggagacta
cagcgtcaaaaagttcgtgtctcccggaaccacattttggattctgctgcgaaggtaatg
gaaatgtattctagccaaaaagctgtgcttgaagttgaatattttggagaagttggcact
ggattgggtccaacgttggagttctatacactattaagtcatgatttgcaaaaggttgga
cttggaatgtggaggtctaattctacatgggataagtcaataatggaaattgatggagat
gaagagaaaaatgagaaaactgctggtagtgttgggggagatatagtccaagctcctttg
gggttgttccctcgaccttggcgaccaaatgctgatgcttctgaaggcagccagtttttt
aaagtcatcaaatatttccggctacttggacgtgtgatggcgaaagctcttcaagatgga
cgacttttagacctgccactatcaacaccattttacaaacttgtgcttggtcaagagctt
gatttgtatgatattctgtcttttgatggtgagtttgggaaaattttgcaagaactgcat
ttccttgtttgtcgaaagcaatatttggaatcgactggtggtgaaagtagtgctgctgtt
gatgaattgcgcttccgcggtaccccaatagaagatctctgtttggattttacgcttcca
ggctatccagaatacatactgaaaccaggggatggcactgtggatatcaataacttagag
gaatacatatcctttgtcgttgatgcaactgtcaaggctggaattattcggcaaatggag
gcatttcgagctggatttaatcaggtttttgatgttgcatcattacaaatatttactccc
caagagttggactatttgctatgtggtcgcagagagttgtgggaggccgagacacttgct
gatcatataaaattcgatcatggatatactgcaaagagccctgcagttgttaatttactt
gaaattatgggagaatttacaccagagcaacagcgggccttctgccaatttgttactggt
gcgcctagacttccacctggtggtctggcagtgctgaatccaaagcttacaattgttaga
aagcattcgtcgtctgcaattgctgctacttccaatggaagtggaccctcagaatcagca
gatgatgacttgcccagtgtcatgacttgtgctaattacttgaagcttcctccatattct
tccaaggaaattatgtataagaaattgctatatgcaatcaacgaagggcaaggatctttt
gatttatcatga
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