Gossypium hirsutum (upland cotton): 107923378
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Entry
107923378 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107923378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107923378
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
107923378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Beta-prop_WDR36-Utp21_1st
Clathrin
TPR_VPS8_2
Beta-prop_WDR5
Beta-prop_EML
zf_RING_Vps8
WD40_Gbeta
WD40
ANAPC4_WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
zf-RING_Vps41
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
107923378
NCBI-ProteinID:
XP_016709069
UniProt:
A0A1U8L7E0
LinkDB
All DBs
Position
A12:82851065..82861750
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AA seq
1932 aa
AA seq
DB search
MEADLDTLLDSHFSDSDDDSNSTVPHRTIDEILNDSDASTSSSSPSSPLSSYQRSDNRLA
RSNTVPQEFVELLEERDALSEGPAESSKTSPFKRIGDPVWRVSSSSSSKQLPTLFGGVKS
NAKPGAALAAAAAASRSVPTPHAAAIKSRRAVSGGVLQRVVGSDDQDVSSVNGESIGVSS
KSSVSGEKLEIDDYTSDNKMGDFQSADTHQNSEASESKDKESEAERVIERIDGSSKLDFD
DSLNKEVTVLGSGEVLDNEIDPVSVSENSLVLDANDSYEKSVLSLPSVDQERNISKDLER
VGLERENVASDMPSYEDGEENASGGDDKSSMSDISELVEERLEQLESEMMSKRVESNARA
TMKPLELAEELEKKQASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDVDASNIITRTLSS
QAFRRDHGSPQVLAVHLNFIAVGMTKGVIILVPSKYTTHHADSMDPKMVILGLQGDRSLA
PVTSMCFNQPGDLLLAGYGDGHVTVWDVQRASATKVIAGEHNAPVIHTLFLGQDSQVTRQ
FKAVTGDSKGLVLLHAFSVVPLLNRFSIKTQCLLDGQKTGTVLSASPLLFDGSYGSTSVT
SQGNATSTSSIGSKMGGVVGGDAGWKLFAEGSSMAEEGVVIFVTYQTALVVRLTPTLEVY
AQLSRLDGVREGSMPYTAWTCMAQPCGSSSENSPTETGERTSLLALAWDRKVQVAKLVKS
DLKVYGKWSLDSSAIGLAWLDDQMMVVLTMTGKLNLFARDGTLIHQTSFAVDGLGGDDLI
TYHTHFINIFGNPEKAYHNCVSVRGASVYILGPMHLTVCRLLPWKERIQVLRKAGDWMGA
LNMAMTLYDGQAHGVIDLPRNLDAVQETIMPYLVELLLSYVDEVFSYISVALGNQIGKAE
QPDDWESRNGSVHSEIKEQFTRVGGVAVEFCVHIRRTDILFDEIFSKFVAIQQRDTFLEL
LEPYILKDMLGCLPPEIMQVLVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVILCREHGL
YGALVYLFNKGLDDFRAPLEELLVVLRNSQGEIASGLGYRMLVYLKYCFTGLAFPPGQGT
LPPSRLLSLRTELLQFLLEVSDRQDKKSASTSAFEGAYLNLYYLLELDTEATLDVLKCAF
IEEISPEPDSSFSESGDANEEAKKEKDLMAESETMLVQKTIGALVHVLGKNTLQTDGVAS
YDDSEFIEAWPTKKDMGYLFEFIACYVACGRAKIPKTVLNQILEYLTSVNDSSQSVSTMS
TERSKRREKQLLALLEVVPETDWDQSYVLQLCENACFYQVCALIHTIRHQYLAALDSYMK
DVEEPIHAFAFINNMLLRLSNGDYTIFRSAVISRIPELVNLSRELTFFLIVDHFKDESSH
ILSELNSHPKSLFLYLKTVIEVHLSGTFNFSCLREEESVDVLSEKRGKESEKVLKAFLKN
LSNFPKYLRHNPLHVTDDMIELYLELLCQFERDSVLKFLETFDSYRVEHCLRLCQEHGII
DAAAFLLERVGDVGSALLLTLSSLNDKFTELDTAIGNAVSKVSLSRSGSMEYFNSILKMK
EVNDIRNLLQACIELCQRNTPRLNPEESEMLWFRLLDSFCEPLMGSYCNDMVSEKENHAG
LVGSLGSQEEEECIIKWRIPKSHKGGHILRKLFSQFIKEIVEGMIGYVRLPTIMSKLLSD
NVGQEFGDFKLTILGMLGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSLLC
CICNSLLTKTTSSFRVRVFSCGHATHIQCELLENESSTRGLSSGCPVCLPKKNTHKSRSK
TALTENGLVSSLPSRSQPAQGSTLHPHENDALDNSYGLQQISRFEILSNLQKDQRLAQIE
NLPQLRLAPPAIYHEKVKKGSGVLAAGESSSQVGGIQKPNKNKQLKDLKLKGSSLRFPLK
SSIFGKEKTSKP
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgatctcgacacgttacttgactcacacttctccgattccgacgacgattcc
aactcaaccgttcctcaccgtaccatcgatgaaatcctcaacgattccgatgcatccacg
tcatcttcttcgccttcatcccctctctcttcttatcaacgttccgataaccgccttgcc
cggtcgaataccgttccgcaagaattcgtggaattgctagaggaaagagatgctctttca
gaaggaccggcggaatcgtcgaagactagtccgttcaagcggattggtgatccggtttgg
agggtttcgtcatcatcttcttcgaaacagcttccgacgctgtttggtggagtgaaatcc
aatgcgaaaccaggggctgcgctcgcggctgcggctgcggcgtctaggtcggttccgact
ccacatgcggctgctatcaagtcgaggagggcggtaagtggtggggttcttcagagggtt
gtaggtagtgatgatcaggatgttagctcagtgaatggggaatcgattggggttagctcg
aaatcaagcgtttcaggtgaaaaattagaaattgatgattatactagtgataataaaatg
ggcgattttcaatctgctgatacccatcaaaatagtgaggctagtgagagtaaagataag
gaaagtgaagctgagagagtaattgaacgaattgacggctcttctaagcttgattttgat
gacagcttgaataaagaagttacagttttgggttcgggtgaagttttagataatgaaatt
gaccctgtttctgtgtctgagaattctctggttcttgatgccaatgattcatatgaaaag
agtgttttgtctttgcctagcgttgatcaggagagaaatataagtaaggacttggagagg
gtgggtttggaaagagagaacgtagcaagtgatatgcccagttacgaagatggtgaggaa
aatgctagtggtggtgatgataaaagttcaatgagtgatatttcagagcttgtagaggag
agattggagcaactagagagtgagatgatgagtaaaagggtggaaagcaatgcacgtgct
acaatgaagccgcttgaactggctgaggagcttgagaagaaacaggcttctactggtttg
cattgggaggagggtgcagctgctcaacccatgaggcttgaaggtgttcggaggggttca
accacgttgggatactttgatgttgatgctagcaatataatcactcggactctttcatca
caggcattcaggcgtgatcatggctcccctcaagttttggcagttcatctgaacttcatt
gccgtaggaatgactaaaggagtcatcatcttagtccccagtaaatataccactcatcat
gctgacagcatggatcctaagatggtgatacttggtttgcaaggggatcggtcccttgcc
cctgtaacatccatgtgcttcaatcagccaggagaccttctcttagctggctatggtgat
ggccatgtcacagtttgggatgttcagagggcatcagcaacaaaagttattgctggagaa
cataatgcaccagtgatacatacattatttctggggcaggattctcaagttactcgccag
tttaaagctgttacaggtgatagtaaaggcttggtgctgttacatgctttctcagttgtt
cccttgcttaataggttctcaatcaaaacacagtgtcttcttgatggacaaaaaacgggc
accgtattgtcagcttccccacttctttttgatggttcatatgggagcacttcagtgacc
tctcaagggaatgctacttctactagcagtattggtagcaagatgggaggcgtagttggg
ggagatgcaggttggaaactcttcgctgaaggctcttctatggctgaagaaggtgtggtc
atatttgtcacctatcaaactgctctggtggtaaggcttactccaacattagaagtctat
gcgcaactttctaggctggatggtgtgcgggagggttccatgccatacactgcatggaca
tgtatggcgcagccttgtggatcttcatcagaaaattcaccgacggaaactggagagaga
acttcacttcttgcacttgcatgggatcggaaagttcaggttgcaaaattggttaaatca
gacctaaaagtatatgggaaatggtctcttgacagttcagccattggtttggcttggttg
gatgatcagatgatggtggttcttacaatgacaggaaaactcaacttgtttgctagggat
ggaaccctgattcaccaaacaagttttgctgtagatggcttgggaggagatgatctcatt
acatatcatactcactttattaatatctttggaaaccctgaaaaagcttatcataattgt
gtatctgtaagaggagcatctgtatatatactaggacctatgcatcttactgtctgccgt
ctccttccatggaaggaacgaattcaggttctacggaaagccggtgactggatgggagct
ttgaacatggcaatgacactttatgatggtcaagcccatggtgttattgaccttcctaga
aacctggatgcggtgcaggagaccataatgccctatcttgtagagttgcttttgtcgtat
gtggatgaagtgttttcctatatttctgtggcattaggtaaccaaattggtaaggcagag
cagccagatgactgggaaagtagaaatggttctgtgcactcagaaataaaagagcaattc
acccgtgttggtggtgttgctgttgaattttgtgtccatatcaggaggactgacattctt
tttgatgaaattttctccaaattcgtggctattcagcaaagagatacatttttagagctt
ctggagccatacatattgaaggacatgcttggatgtttgcctcctgagataatgcaagtg
ctggtagaacattacagcagcaaaggatggttgcagcgagttgaacagtgtgttctccac
atggatatttcgtccttggacttcaatcaggttgtcattttatgtcgggagcatggttta
tatggtgctctggtatatcttttcaacaaaggattagatgatttcagggcgcctttagag
gagttgttagtagttttacgaaatagtcaaggggaaattgcttctggccttgggtacagg
atgcttgtttacttgaagtactgctttacaggtcttgcttttccaccaggccaggggact
cttccaccatcacgcttgttgtctcttaggactgaacttctgcagtttttgttagaggtt
tctgatcgtcaggataaaaaatcagcttcaacttcggcttttgaaggggcataccttaac
ctgtattatctcttagagttggatactgaggccactttagatgttctcaaatgtgctttc
atagaagagatatcccctgaaccggactcctctttttctgaatctggagatgcaaatgag
gaagctaaaaaggagaaagatttgatggctgaatctgaaacaatgttggttcagaaaacc
attggtgctctggttcatgttcttggtaagaatacccttcaaacagacggggttgcaagc
tatgatgactctgaatttatcgaagcatggcctacaaaaaaggacatgggatatctgttt
gagtttatcgcatgctatgttgcatgtggaagagctaaaatcccaaaaactgttctaaat
cagattttggaatacttgacttcagtaaatgacagttcacaaagtgtttctaccatgagt
actgaaaggtccaaaagaagagagaagcaattactggcacttttggaggtagtgccagaa
actgattgggaccaatcctatgtgttacagttatgtgagaatgcatgcttttatcaggtt
tgcgccttaattcataccatcagacatcagtatcttgctgctctcgacagctatatgaaa
gatgtggaagagccaattcatgccttcgcatttatcaacaacatgttattgcggttgagc
aatggagattatactattttcagatcagcagtcatctctcgaattccagagctggttaat
ttaagcagagagttgacattcttcttaattgttgaccattttaaagacgaaagttctcat
attctatctgaacttaactctcatccaaaaagccttttcctttacttaaagacggtcatt
gaggttcacttatcaggcaccttcaacttctcttgtttaagagaagaagagagtgtagat
gtcttgagtgaaaaaagggggaaagaatcagaaaaggtccttaaagccttcttgaaaaat
ttgtctaattttcccaagtatctgcgacataatcctcttcatgtaactgatgatatgatt
gagctttatctggagttattatgtcagtttgaacgggattcagttctcaagttcttggaa
acttttgatagctatcgagttgaacactgtctccgcctgtgccaggaacatggaattata
gatgcagctgcatttttattagaaagggttggtgatgttggtagtgctcttttgcttaca
ctttctagccttaatgataaatttacagagcttgatactgccatcggaaatgcggtctct
aaggtatctttgagtagatctggtagcatggagtatttcaactctattttgaaaatgaag
gaggtgaatgacatacgcaatttattgcaagcctgtattgaattatgccaacggaatacc
cctcgtttgaatccagaagagtctgagatgctttggtttagattacttgactcattttgt
gaacctttgatgggttcgtactgcaatgatatggtatctgagaaggaaaatcatgcggga
ctggttgggtcattgggctctcaagaagaagaagaatgcataatcaagtggaggataccg
aaatctcacaaaggtggtcatatattgaggaaattgttctctcaattcatcaaagagatt
gttgagggaatgataggatatgttcgtcttccaactattatgtcaaaactcctatctgat
aatgtcggccaggaatttggagattttaagcttaccatattgggaatgcttggaacttat
ggctttgaaagaagaattctggatactgcaaaatctttgatcgaggatgacacattttac
acaatgagcttactgaagaagggagcttctcatggatatgcacctcgaagtttactatgt
tgtatatgcaacagccttcttaccaagaccacttctagctttcgtgttcgggtttttagt
tgtggtcacgcaactcatattcaatgtgagcttctggaaaacgagtcatcaactagaggc
ttgtcatctggatgccctgtttgtttgcccaagaaaaacactcacaaatctagaagtaaa
accgctcttacagagaatggtttagttagttcgttgccctcaagatcccaaccagcacaa
ggatcaacattacaccctcacgaaaacgacgcactagataactcttacggccttcaacaa
atatcacggtttgaaattttaagtaaccttcaaaaagaccagagattagcccagatagaa
aatttaccacagttgaggcttgcaccgccggcgatttatcacgaaaaagtgaagaaagga
agtggagtattagcagcaggggaaagcagcagtcaagtaggtggaatccaaaaaccaaac
aaaaacaagcaactcaaggatctaaaactaaagggatcatctctcagattcccactaaaa
tctagtatttttggcaaggagaaaacaagcaaaccatag
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