Gossypium hirsutum (upland cotton): 107923402
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Entry
107923402 CDS
T04793
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107923402
03036 Chromosome and associated proteins [BR:
ghi03036
]
107923402
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107923402
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
107923402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
Tex_central_region
HHH_9
HTH_44
HHH_3
S1
Tex_N
Motif
Other DBs
NCBI-GeneID:
107923402
NCBI-ProteinID:
XP_016709099
UniProt:
A0A1U8L7H0
LinkDB
All DBs
Position
D06:62130049..62138959
Genome browser
AA seq
1642 aa
AA seq
DB search
MGKNVVSDEEEELELDEDGEPIEGDTLNGRDPDDDDDEEDDEGQDEYENDGFIVDDVEDE
EVDEAEEREDSDEERRKKKKKRKKKEAEDLDEDDYELLRENDVNVPKGSKKFKRLKKAQR
DLDGIRYGLSDDEFDGSMKGGATAEEKLKRTLFGDDDGQPLEDLPEDEEQIEEEEDGDMG
EEDEMADFIVEEDDVPGASVRRKKMKNKKSRHAFDVSSSALKEAQDIFGDVDELLQLRKQ
GLDYSDQKERRLEDQFEPTVLSEKYMTVKDDEIRTIDLPERMQISEESTGSPPMDEESII
EESNWMHKQLTSGAVPLFGKERTDLSINKDDIMRFLDLTHVQKLDIPFIAMYRKELCLSL
LQDPEQHEVDDVDQEKSDKKPTIKWHKVLWAIRDLDRKWLLLQKRKSGLQSHYSKRFEEE
SRRIYDETRLSLNQQLFESILKDLKDAESEREVDDVDAKFNLHFPPGEVGADEGQYKRPK
RRSQYSICYKAGLWEVASKFGYSAQQLGSQLSLEKLPVDELEDPKETPEEMASNFTCAMF
ETPQSVLKGARHMAALEISCEPSVKKYVRNVYMENAVVSTSPTPDGKIAIDSFHQFAGVK
WLREKPLSKFEDAQWLLIQKAEEEKLLQVTFKLPEKIMDDLIKECNERYLSNGVSKSAQQ
WNEQRKQILNDALFGFLLPSMEKEARSLLASGAKNWLLLEYGKGLWNKVSVGPYQKKEND
INSEEEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQ
QRVLKFMTDHQPHVVVLGAVTLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDE
SLPRLYENSRISADQLPGTSGIVKRAVALGRYLQNPLAMVATLCGPEKEILSWKLNPMEN
FLTADEKYSMIEQVLVDVANQVGLDVNLAASHEWLFAPLQFISGIGSRKAASLQRSLVRV
GTIFSRKDFLQAHGLGKKVFVNAVAFLRVRRSGLAANSSQFIDLLDDTRIHPESYLVAQE
LAKDVYDEDFKGDNDEDDALEMAIEHVRDRPSLLKSLRLDNYLESKKRGNKRETFFDIRR
ELIQGFQDWRKPYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGGRAICALESGLT
GMIMKEDYADDSRDIVELSDRLHEGDILTCKIKSIQKNRYQVFLVCKDSEMRSRHQHVQN
LDPYYHEERSSIQSDQEKARKEREMAKKHFKPRMIVHPRFQNITADEAIEYLSDKDPGES
IIRPSSRGPSFLTLTLKVYNGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDE
VMDRYVDPLVSHLKAMLSYRKFRKGTKVEVDELLKIEKSEYPMRIVYCFGISHEHPGTFI
LTYIRTSNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQKHIDDPQHESAQSIRSVAAMV
PMRSPAADGSSGGSMGGWKGHSHDRGQSSTPGSRTGRGRDGYQSGAPRGGRGRGRGGSYN
SNRGRNNGQDSSYDDTPKWDSGSSKKGDDGGWGSFPGAKVQNSPGTEAFPGGWGASGTES
GGGSGSGWGASGTESGNGSGSGWGGSGGGSGWGASGTESGGGNGSGSGWGGGSGGWDQAS
GGADNGGSGWGSAPKSSNSGGW
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaacgtggtatctgacgaagaagaggagttggaactcgatgaagatggagag
cccattgagggagacacactcaatggccgcgaccctgacgacgacgacgacgaagaagac
gacgaggggcaagatgaatatgagaatgatggattcatagttgatgatgtggaggatgaa
gaggtagatgaagctgaagagagggaagatagcgatgaggagaggcggaaaaaaaagaaa
aaaagaaagaagaaggaagctgaggaccttgatgaagatgactatgagctcctccgggag
aatgacgttaatgtaccaaagggtagcaagaaatttaagcggctaaaaaaggctcaaagg
gatttagatgggatacgatatgggctctctgatgatgagtttgatggtagcatgaagggt
ggagcaactgctgaggaaaagcttaagcgtaccttatttggcgatgatgatgggcaacct
cttgaagatcttcctgaagatgaagaacaaatagaagaggaagaggatggagatatgggt
gaagaagatgaaatggcagactttattgtagaagaagatgatgtgcctggggcttctgtt
agacggaagaagatgaagaataagaaatcaaggcatgcatttgatgtttcgtcatctgcg
ttaaaggaagctcaagatatatttggtgatgttgatgaactcctgcagctacgcaaacag
ggattagattatagtgatcagaaagaaaggagacttgaagatcaattcgaacccactgtt
ctttctgaaaagtatatgacagtaaaggatgatgaaattcggacgattgatcttccagaa
agaatgcagatttctgaggaaagcactggcagtcctccaatggatgaagagagcataata
gaagagagcaactggatgcataaacagcttacaagtggtgcagtaccgttatttggtaaa
gaaaggacggatctttctataaacaaggatgacatcatgaggtttttggacctaacacat
gtccagaaattagatattccctttattgcgatgtatcgcaaggagctgtgcctaagtctg
ctgcaagatcctgagcaacatgaggttgatgatgttgatcaggaaaaatctgataaaaaa
cctacaataaagtggcacaaggtactttgggcaattcgggatctggaccggaaatggctg
cttcttcaaaagaggaagagtggccttcagtcacattatagtaagcgatttgaagaagaa
tctcgtcggatatatgatgagacaagacttagcttgaaccaacaactttttgagtcaatt
cttaaagatctcaaggatgcggaatcagaaagggaagttgatgatgttgatgccaagttt
aacttgcatttcccaccaggcgaggttggtgcagatgaaggtcaatataagaggccaaag
aggagatcacaatatagtatttgctataaggctggtctctgggaggttgcaagcaagttt
ggatacagtgctcagcaacttggatctcagctctctcttgaaaagttgcctgttgatgag
ttggaagatcctaaggagacaccagaagagatggcttcaaactttacatgtgcaatgttt
gagactccacaatctgtcctcaaaggagccagacatatggcggcgcttgagataagttgt
gagccatctgtcaagaaatatgttcgtaatgtctatatggagaatgctgtagtatcaacc
agtccaacacctgatggaaaaatagccatagattctttccatcagtttgctggtgttaag
tggctgcgggaaaaaccattgagcaaatttgaggacgcacagtggcttctaatccagaag
gctgaagaggagaagcttcttcaagtaacttttaagctgccagaaaaaattatggatgac
ttgattaaagaatgtaacgaaagatatctcagtaatggcgttagtaaatctgctcaacaa
tggaatgaacagagaaagcagatactgaatgatgctctttttggtttccttttgccatcg
atggagaaagaagctagatccttgttggctagtggggctaagaactggttacttttggaa
tatggcaagggtttgtggaataaagtttccgtggggccttatcaaaagaaggaaaatgat
attaattctgaagaggaggctgcaccacgtgtcatggcatgctgttggggccctgggaag
cctgcaactacttttgtgatgttagattcatccggagaggtgcttgatgtgctttacact
ggttctcttacattacggtctcaaaatgttaatgaccagcaacgcaagaaaaatgatcag
cagcgtgttttgaagtttatgactgatcatcaaccacatgttgttgttcttggagctgtg
actttgtcttgtacccgtttgaaagatgatatttatgagattatttttaagatggtggag
gaaaatcctagagatgttgggcatgaaatggatgagctgagcattgtatatggggatgag
tctctaccccgtctctatgaaaattctcggatttctgcggatcagttacctggtacatca
ggaattgttaaacgggctgttgctcttgggcgttatcttcaaaatccactggcaatggtt
gcaactctttgtggccctgagaaggaaatattgtcttggaagcttaatcctatggagaac
tttctaacagcagatgagaagtatagcatgattgaacaggttttggttgatgtcgcaaac
caggttggccttgatgttaatttggctgcaagccatgaatggctgtttgctcctttgcaa
ttcatttccggaattgggagtagaaaggcagcatcactgcagaggtcattagtaagagtt
ggaacaattttcagtcgaaaagactttttgcaagcccatggacttgggaagaaggttttt
gtcaatgcggtagcctttctacgtgtccgtcggagtgggcttgctgccaatagcagccag
ttcattgatttgttggatgacactagaatacatccagaatcttatcttgttgcccaggaa
ttggccaaagatgtttacgatgaggattttaaaggtgacaatgatgaggatgatgcattg
gaaatggcaatagaacatgttagggaccgaccaagtttgttaaaaagccttcgtcttgat
aactatctagaaagcaagaagcgcgggaataagagggagaccttttttgatataagaagg
gaattaattcagggatttcaggattggcggaaaccatataaagaaccaagtcaagatgag
gagttctacatgatttcaggtgaaactgaggataccctggcagaaggccgggttgtgcaa
gcaacagttcgcagagtgcaaggtggacgggctatttgtgcacttgaatctggattaact
gggatgattatgaaagaagactatgcagatgactcgagagatattgtcgagttgtctgat
aggctgcatgaaggtgatatcttgacctgcaagatcaaatcaattcaaaagaataggtat
caggtgttcctggtttgtaaagacagtgagatgagaagccgacaccagcatgtccagaac
cttgacccttactaccatgaggagcgaagcagcatacagagtgaccaagagaaagctcgt
aaagagagggaaatggccaagaaacattttaagccgaggatgattgtccatccacgcttc
caaaatattactgccgatgaagctattgagtatttatccgataaggatcctggagaaagc
atcatccgtcccagttctcgtgggccttcttttctaaccttaactctcaaagtttataat
ggagtttatgctcacaaggatatagttgaaggtggaaaagaacacaaggacattaccagc
ctgctccgcattgggaagacattgaaaattggggaagacacttttgaggatttggatgag
gtaatggatcgatatgtcgacccccttgtgtctcatctgaaggcgatgctgagttatcgc
aagttcaggaagggaactaaagtagaggttgatgagcttctaaagattgagaaatcagag
tatcctatgagaatagtgtattgctttggcatttctcatgaacatcctggcacttttatt
ctaacttatatacggacttcgaatccacatcacgagtatattggcttatatcctaaggga
ttcaagttccgaaaaaggatgttcgaggacattgatcgtctggttgcttatttccagaag
catattgacgatccacagcatgagtcagctcaatcaattagatcagttgcggcaatggta
ccaatgcggagccctgctgctgatggctcttctgggggatctatgggtggttggaaaggg
cattctcatgacaggggtcaatcttccactccaggttctagaacaggtcgtggccgagat
gggtatcaaagtggtgctccacgtggtggtcgtggacgtggtaggggtggctcgtataac
agcaaccgggggcgtaacaatgggcaagattcatcttatgatgatacccccaaatgggat
tcaggtagcagcaagaaaggggatgatggtggttggggcagtttcccaggagctaaagtt
caaaactctccaggtacagaagctttccctggtggttggggtgcttcaggaactgaaagt
ggaggtggcagcggcagtggctggggtgcttctggaactgaaagtggcaatggcagtggc
agtggctggggtggcagtggtggtggcagtggttggggtgcttctggaactgaaagtgga
ggtggcaatggcagtggcagtggttggggtggcggtagtggaggttgggaccaagcaagt
ggtggtgctgacaatgggggttctggctggggatctgctcccaagagcagtaattctggt
ggttggtga
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integrated database retrieval system
