Gossypium hirsutum (upland cotton): 107923434
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Entry
107923434 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107923434 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107923434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107923434
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107923434
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107923434
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107923434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
107923434
NCBI-ProteinID:
XP_040952022
UniProt:
A0ABM3AB06
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All DBs
Position
D06:complement(61918199..61924072)
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AA seq
581 aa
AA seq
DB search
MRPPFNSFSHRPQQQNGFQSNSAVANQCNNNMNMLMMQPQMGIFNPQLPTPLSNNINNIN
KNSSVMPLLNNVGFMNGANQQFPTQNNSTGFPQIGPVFPNMNNLAMFPQLPAQFNNSLHN
PNQPNWLNLPQQNNMGLTNGQQQRQQLQQQQLFLQNQLQNVSQLLNSQLPDLSQFVSGGQ
AIVPNPHFGIMRPNQMQQQANQSQQNLADVNASNLSSVPASLVPGDPSFGRPMGGPGKNS
QNMNNFPGRNAKRDSKWGSQKSKFQQPRFHQADNGKRAFASSNGHKKKGPDNERAAKFPH
SNSANPAKEKRRSLALTYTEEEIRKWREERKKFYPTKANIKKKLSGKEADSEVEKSRSEQ
LKEILAKQAELGVEVAEIPPQYLLGLEKRVNGREENRRPSTKRGRFGMRNDKRGRPDKRD
CISKKPRPTTEESFDGSSFSKRSPTLLQKLLRADIRKDKSWLLQVLRFMVMNSFFKDWPE
KPLKFPVVVVKDGVSEGEIVQEKTLLDAEDNIEAGNKTMTQSIVDAAGDDDIENNNAGEE
GEEDDDDNKKHDTQVDPVNLYVREKVAELVRNGEGEGEIID
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgagacctccgttcaattcgttttcccaccgaccccagcagcagaatggttttcaatca
aattctgcggtggcaaaccagtgcaataacaacatgaacatgcttatgatgcaacctcaa
atgggtatttttaatcctcagctgccaactccgttgagcaataatattaataatattaat
aagaattctagtgttatgccattgctaaataatgttggattcatgaatggagctaaccag
cagtttcctacacaaaataacagtacggggtttcctcaaattggtccagttttcccaaac
atgaacaatcttgcaatgttcccacaacttcctgctcaattcaataactctttgcataat
ccaaatcaaccaaattggttgaatttgcctcaacaaaataatatgggtttgacaaatggg
cagcagcagcggcaacaactacagcaacaacagctttttttacagaaccaattgcagaat
gtgagccaacttttgaattctcaactcccagatctctcacagtttgtttctggtggccaa
gccattgttccgaatccgcatttcgggattatgcggccaaaccagatgcagcagcaagcc
aatcagagtcagcaaaatttagcggatgttaatgcatcgaatttgtcttctgtacctgct
tcactagtaccaggagacccttctttcggaaggccaatgggtggtcctggtaaaaacagt
cagaacatgaacaactttcctggaagaaatgctaaaagggattcaaaatggggatctcag
aagtctaagttccagcagccccggttccatcaagcggataatggaaagagagcgtttgca
tcttctaatggacataagaaaaaagggcctgataatgagagggcagctaaatttcctcat
tctaattctgcaaacccagctaaagaaaagagaaggtcgcttgctttgacctatacggag
gaagagataagaaagtggcgtgaagaacgtaagaagttctatccaacaaaagccaacata
aagaagaaactgagtggaaaagaggctgactccgaggttgaaaaatcacgtagcgagcaa
ctcaaggagattttggcaaagcaagctgaattaggagtcgaagttgcagaaattccgcca
cagtatcttctaggtttggagaaaagggtgaatggaagggaagaaaaccgtaggccatca
accaagagggggagatttggaatgaggaatgataaaagagggagaccagataagagagac
tgtatttccaagaagccaagaccaacaactgaggaatcatttgatggcagttctttcagc
aagaggagtccgacccttttgcaaaaacttcttagagctgatataaggaaagataaaagc
tggttgttgcaggttctccgcttcatggttatgaattctttctttaaggattggcctgag
aagcccttgaaatttcctgtagtagttgttaaagatggtgtatccgagggtgagattgtt
caagagaaaaccttgcttgatgctgaagataatattgaagctggcaacaagacaatgacc
caaagtatcgttgatgctgctggtgatgacgatatcgaaaacaacaatgctggtgaagaa
ggagaagaagatgatgacgacaacaaaaaacatgacactcaagttgacccagtgaatttg
tatgttagggagaaagtagcagaacttgtgaggaatggtgaaggagagggagaaatcatt
gactag
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