Gossypium hirsutum (upland cotton): 107923790
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Entry
107923790 CDS
T04793
Name
(RefSeq) ATP-dependent helicase BRM-like
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107923790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107923790
03036 Chromosome and associated proteins [BR:
ghi03036
]
107923790
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107923790
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
107923790
Chromatin remodeling factors
BAF complex
107923790
PBAF complex
107923790
GBAF(ncBAF) complex
107923790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
QLQ
ResIII
DEAD
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
107923790
NCBI-ProteinID:
XP_040936883
LinkDB
All DBs
Position
A11:8815044..8825783
Genome browser
AA seq
2251 aa
AA seq
DB search
MQSGGGGGGGPSRNPGVGPVGRTASTSSAASPSSSSSAVSAPQFGYDSVQQQQQQQQQQQ
QQQQQQQIASRQSLQQQLFRKPEGNEAILAYQARGLQGMMGGNNVPSSPGSMQPSQQSRK
FFDLAQPHASAQDSQQRSQGVDQQMLNPVQQAYYQYAYQAAQHQKTLLAQQQAKMAMLGS
ASLKDQDTRIGNLKMQELISMQVAKQVQASSSKNTSEQLDCVEKQIEQGPESASEQRNEL
KAPAQATVGGKSMPGNVLRTMQAQAQQTVQNSGNNQLVMAAQLQAWARERNIDLSQPANA
NLMAQLIPLMQSRMAAQKKTNESNMAPVPVSKPQVSSPSVLSESSPCGNSSNDISAQSGP
AKARPTVIPSPFCSTSSAGAVGDAKNIPMQQLAINGRDNQLPPRQTVVHGNGMPPMHPPQ
SSANINQSIDPSFPAKTSLGGTETLQMQNIKQLSRPSPQPAAPNNGGSVNNTPSQGGAPS
KMAQQRFGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLQAIIPPALEQQQLQFPPLGGN
NQDRNGGKSIEDKGKHLESNEKVLQAGPSTDGQNVIKEEAYAGDEKATASTADMQGVSAT
AKDFSSALPAAKEEQKSSVFPAKSDQEVEPGLPKIPVRNDSSVERGKSVAPQVAASDGGQ
IKKPVEANSAPQKDLGPARKYHGPLFDFPFFTRKHDSYGSAMPNNNNNLTLAYDVKDLLF
EEGMEVLSKKRSENLRKIGGLLAVNLERKRIRPDLVLRLQIEERKLRLVDLQARLRDEVD
QQQQEIMAMPDRPYRKFVRLCERQRMELARQVQATQKALREKQLKSICQWRKKLLEAHWA
IRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLIEQQTNIPGD
AAERYEVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAVAARLQGLSEEEVRAAA
ACAGEEVMIRNRFMEMNAPRDGSSVSKYYNLAHAVNERVIRQPSMLRAGTLRDYQLVGLQ
WMLSLYNNKLNGILADEMGLGKTVQVMSLIAYLMECKGNYGPHLIIVPNAVLVNWKSELH
NWLPSVSCIYYVGGKDQRSKLFSQEVLAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDE
AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF
SQPFQKEGPTHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKC
RMSAFQSAIYDWIKSTGTLRADPEDEKIRVSKNPLYQARVYKTLNNRCMELRKTCNHPLL
NYPYFNDLSKNFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLV
YRRIDGTTSLEDRESAIVDFNGPDSECFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKN
EEQAVARAHRIGQTREVKVIYMEAVVDKISSQQKEDELRNGGTVDFEDDFAGKDRYMGSI
ESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHQ
VNRMIARSEEEVELFDQMDEELDWTDEMTCHEEVPKWLRASTKEVNATVATLSKKPSKNI
LFTAGVVGVSNEMESERKRGRPKGKKHPNYKEIDDDNGEYSEASSDERNGYSVHDEEGET
GEFEDEEFSGAVGAPPLNKDQSEEDGPLGDNGNEYAQASEHIRNNRILEEGGSSGSSLDS
RRPMQMVSPVSPQKFGSLSALDARPGSVAKKLHDELEEGEIALSGDSHMDHQLSESWIHD
REEGEDEQVVQPKIKRKRSIRVRPRLTVERADEKSVIEVPHLLHGESSLLPSQLDQKYQS
QLRIDTETKPTRERNAFRLDPNDSSSKTRRNLPPRKIANTTKLHASPKSGRVNMASPAEN
ACEPTRESWDGKLVNTSGSSNFGVKMSDGIQRKCKNVISKLRRRIDKEGQQIIPLLTDLW
KRIENSGYMGGSGSNHLDLRKIDQRVDRLEYSGVTELVFDVQLVLKSAMQFYGFSHEVRS
EARKVHDLFFDLLKIVFPDNDFREARNALSFSSPVSTSTSGPSARQVAVSKRQKPINEVE
SDPDLTQKTLQRGFPHAGEETRVRVHMPQKESRLGKGSGIIKEHQQDDSPLTHPGELVIC
KKKRKEREKSIAKPRSGSVGPVSPPSIGHNMRSQGPGSVSKDASLTQQSSHQQGLPNQPG
HPSKGCGGSVGWANPVKKLRTDAGKRRPSLL
NT seq
6756 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctggtggtggtggcggaggtgggcccagccggaaccctggggtgggtccggta
gggcggaccgcgtccacatcgtctgcagcttcgccctcttcctcgtcatcggccgtttca
gcccctcagttcggatatgattcggtgcagcagcaacagcagcaacaacaacaacaacaa
caacaacagcagcagcagcaaatagcgtctaggcagtcattacaacaacaactatttaga
aaacctgaaggaaatgaagccatcctagcatatcaagcccgtggtcttcaaggtatgatg
ggtgggaacaatgttccttcatctccaggctccatgcaaccgtctcaacagtccaggaag
ttttttgacctggctcaaccgcatgcttctgctcaggacagccagcaaaggagtcaaggt
gtggatcaacaaatgttgaaccctgttcagcaagcatattatcagtatgcttaccaggct
gctcagcatcaaaagacacttttagcacagcagcaggctaagatggcaatgttgggctct
gcatctcttaaggatcaggacacgcgaattggaaacttgaaaatgcaggaacttatttcc
atgcaagtagctaagcaggttcaggcatcatcctctaagaacacatccgagcagcttgat
tgtgttgaaaagcagatagagcaaggaccagagtcagcttctgagcaaagaaatgaactc
aaggcacctgcccaggctacagttggtggaaaatcaatgcctggaaatgttttgaggaca
atgcaggcacaagctcagcaaaccgttcaaaactcaggaaacaatcaactcgttatggct
gcacagttgcaggcatgggcacgtgagcgtaatattgatctgtcacagcctgcaaatgcc
aacttgatggcacagctcattccactcatgcagtcaaggatggctgcccagaaaaagaca
aatgaaagcaatatggcacctgtgcctgtgtccaagccgcaagtctcttctccatcagtt
ctaagtgagagttctccctgtggtaattcatctaatgatatatctgcccagtctggtcct
gcaaaagccaggccgacagttatacctagccctttttgctcaacttccagtgctggggca
gttggtgatgctaagaacataccaatgcagcagttagctattaatggccgtgataaccaa
ttgcctcccagacagacagtagtgcacgggaatgggatgcctcctatgcatcctccacaa
tcatctgcaaatattaaccagagcattgatccatcttttccagcaaaaacttcattaggt
ggcacagaaacactgcaaatgcagaatatcaaacagttaagtcgaccttctccacagcct
gctgctcctaataatggggggtcagttaacaacacaccatcgcaagggggagcacctagc
aagatggcacagcaacgttttggtttcactaaacaacaacttcatgttctcaaagcacaa
atactagcatttaggcgcctgaagaaaggagaaggtacacttccacaagaacttcttcaa
gccattatacccccagcacttgagcagcagcagctgcagtttcctccgctaggtggaaat
aatcaggacagaaatggtggaaagagtatagaagataaagggaagcatttggaatctaat
gaaaaggttttgcaggctgggccatctactgatggacagaatgttattaaagaggaagct
tatgcaggagatgaaaaagcaactgcatcaacagctgatatgcaaggtgtgtcagccact
gccaaggatttttcatccgcgttacctgccgcaaaagaagagcagaaaagttctgtcttt
cctgccaagtctgaccaagaagtggaacctggtcttccaaaaattccagttagaaatgat
tctagtgtggagagaggaaagtctgtcgcaccacaagttgctgcatctgatggagggcaa
attaagaaacctgtggaagcaaactcagcgccccagaaagatcttggccctgccagaaag
tatcatggaccactatttgattttccctttttcactaggaagcatgactcttacggctca
gcaatgcctaacaataataataatctaacactggcatatgatgtcaaagatcttctcttt
gaggaagggatggaagtccttagcaagaaacgatcagaaaatttaaggaagattggtggc
ttactagcagtaaatttggaaaggaaaaggattaggccagatcttgttctgcgactgcag
attgaagaaagaaagcttcgacttgtagatctgcaggcacgtttaagagatgaagttgat
cagcagcaacaagagataatggcgatgcctgacagaccatacagaaaatttgtccgcctg
tgtgaacgtcagcgtatggagttggccagacaagtacaagccactcagaaggccttgaga
gagaaacaattgaaatccatctgtcagtggcgtaagaagctcttggaggctcactgggcc
atccgtgatgcaagaactgctcgcaataggggagttgctaagtaccatgaaagaatgtta
cgggagttttcaaagagaaaagatgatgacaggaacaagaggatggaggccttgaagaat
aatgatgttgaaaggtacagagagatgttgattgagcagcagacaaacatccctggtgat
gctgcagagagatatgaagttctttcatcattcctgacgcagactgaagagtatcttcat
aaactgggaagtaagataactgcagccaagaatcagcaagaagtggaggaggcagcaaat
gctgctgctgttgctgcacggttgcagggtctatcagaagaagaagttagggctgcagca
gcttgtgctggagaggaagtaatgataagaaatcggtttatggaaatgaatgcacccagg
gatggttcatctgttagcaagtactataatcttgctcatgccgtgaatgaaagagtcata
aggcaaccatcaatgctacgagctggaacattacgagattatcagcttgttggtttacaa
tggatgctttctttgtataataataaactaaatggtatcttagctgatgagatgggcctt
ggaaagactgttcaggttatgtcattgattgcttatttaatggaatgcaaaggaaactat
ggtccacatcttataattgttccaaatgctgttctggtaaattggaagagtgagctgcat
aattggctgccgtctgtgtcatgcatatattatgttggaggaaaagatcagcgttcaaaa
ttattttctcaagaggttctggcaatgaaatttaatgtcctcgtgacaacttatgaattc
atcatgtatgatcgatcaaaactttctaaaatcgattggaagtacattataattgatgaa
gcacagcgaatgaaagatagagaatctgttttagctcgtgatcttgatagataccgctgc
cagaggcggttacttcttactgggacacccttacagaatgacttgaaagaactctggtca
ctgttaaatcttctccttcctgaagtgtttgataatcgcaaggcatttcatgattggttt
tcacaaccatttcaaaaggaaggccctacgcataatgcagaggatgattggcttgagacg
gagaagaaggttatcatcatccaccgacttcatcaaatcctggagccttttatgcttaga
cgtcgtgttgaagatgtggaaggttccctccctccaaaggtttcaatagttttaaaatgc
agaatgtcagcttttcagagtgccatttatgattggataaagtcaactggaacacttcga
gctgatcctgaagatgagaagatcagggtttcaaaaaatccactataccaggcaagggtg
tacaaaactttaaataaccggtgtatggagcttcggaagacttgcaatcatcctttgctt
aattacccctatttcaatgacttatccaaaaatttccttgtgaggtcttgtggaaaattg
tggatcctagacaggatcctaataaaactgcaaagaactgggcatcgtgtattactcttt
agtacgatgacaaagcttctggatatcttggaggaatacttgcagtggaggaggcttgtc
tacagacgtattgatggaacaactagcttggaagatcgtgaatcagctattgttgacttc
aatggccctgactctgaatgcttcatattcttactaagtattcgtgcagctggacgtggt
ctaaatcttcaatctgctgacactgttgttatatatgatcctgatccaaatcctaaaaat
gaggaacaggcagtcgctagagcccaccgaattggacaaacaagggaagtcaaagtcatt
tacatggaagcagttgttgacaaaatctctagtcagcagaaggaggatgaactaaggaat
ggaggtacagttgattttgaggatgattttgcaggtaaggatagatatatgggatctatt
gagagcctcataaggaataacattcagcagtataaaattgacatggctgatgaagtaatc
aatgccggacgttttgaccagagaacgactcatgaagagagacgtatgactttagaaaca
ttattgcatgatgaggagaggtatcaagaaactgtccatgatgttccttctttgcaccag
gtaaatcgcatgatagcaagaagtgaagaagaagttgagttgtttgatcaaatggatgaa
gaactggattggacagatgagatgacttgccatgaagaggtacctaagtggcttcgagcc
agtacaaaagaagtgaatgctactgtggctactttatcaaaaaagccgtccaagaacatt
ttatttactgctggtgttgttggtgtctcaaatgaaatggagtcagagagaaaaaggggg
cgacccaaggggaaaaagcatccaaactataaggaaatagatgatgacaatggggaatac
tctgaagcaagttctgatgagagaaatggttattctgtacatgatgaagagggagaaact
ggagaatttgaagatgaagaatttagtggtgctgttggtgcaccccctctaaataaggac
cagtctgaagaagatggcccactaggtgataatggaaatgagtatgcccaggcttcagaa
cacattagaaacaatcgcatacttgaagaaggtggttcttcaggatcatcattggacagt
cgaaggccaatgcagatggtgtctcctgtttctcctcagaaatttggatctctctccgcg
ttagatgctagaccaggttctgttgcgaaaaaactgcatgatgaacttgaggaaggtgaa
attgctttatctggagattctcacatggaccaccagctatctgaaagttggattcatgat
cgtgaagaaggtgaagatgaacaagttgtccaacccaagataaaacgaaagcgtagtatt
cgggttcgaccccgtcttaccgtggaaagggcagatgagaaatctgtcattgaagtgcct
catctcctacatggagaatcatctttgttgccttcacagctggaccaaaagtaccaatca
caactaaggattgatactgagacaaaaccaactcgtgagcggaatgctttcaggcttgat
ccaaatgattcatcttctaaaacgaggaggaacttgcctccaagaaaaatagctaataca
actaagttgcatgcgtcaccgaaatctggtagagtgaacatggcctctcctgcagaaaat
gcttgtgaacccaccagagaaagttgggacggtaaactggttaatacaagtggatcgtca
aattttggtgtgaagatgtctgatggcatccaaagaaagtgcaaaaatgtgattagcaag
cttcggaggagaatagataaggagggccaacagattataccacttttaacagatttgtgg
aagaggattgaaaattcaggctacatgggtggaagtggaagtaatcatttggatttgcgg
aagattgatcagcgtgttgacagattagagtacagtggagttacagagcttgtttttgat
gtgcagttagtattaaaaagtgcaatgcaattttatgggttttcacatgaggtcagatct
gaagccaggaaagtacatgatctgttttttgacttgttgaagattgtatttccagataac
gatttccgcgaagctagaaatgctctttctttctctagcccagtatctacctcgacctct
ggtccttctgcaagacaggtagcagttagcaagaggcagaagccaataaatgaggtggaa
tctgatccagacctaactcaaaagacattgcaacgtggattccctcatgctggtgaggaa
acaagggttagagtgcacatgccccaaaaggaatcgagacttgggaaaggaagtggtatt
atcaaggaacatcagcaggatgattctcctctaactcatccaggggagctggttatttgc
aagaaaaagaggaaagaaagggaaaagtctatagcaaagcctaggagtggatcagttggc
cctgtttctcccccgagtataggccacaacatgaggagtcagggtccaggatcagtctcc
aaggatgcaagtcttacccaacagagtagccatcagcaaggtttgcccaatcagcctggt
catccctcaaaaggttgtggtgggagtgttggttgggccaatcccgtgaagaaattgaga
acagacgcaggtaaaaggagaccaagccttctatga
DBGET
integrated database retrieval system
