Gossypium hirsutum (upland cotton): 107923842
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Entry
107923842 CDS
T04793
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107923842
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107923842
Surveillance factors
Other surveillance factors
107923842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
SNaCT1
Motif
Other DBs
NCBI-GeneID:
107923842
NCBI-ProteinID:
XP_040936739
LinkDB
All DBs
Position
A11:complement(6196605..6203768)
Genome browser
AA seq
1646 aa
AA seq
DB search
MADGKLDLPDDLLPSKIGSDHFAKDEAWDRNLEEKGLTGLLDDNKDQPTSESSIPLSPQW
LYSKVAEAKTLTVGASGDTKAPNLLPHGTPGDPNLKDSWRLDSSQDKKEWRRTAPDLEGS
RHWREEERETSLLGRRDRRKEDRRTDISSTMDVPENRTLLPSERRQDVSNRSSGHESRRG
NKWSSRWGLEDKEKDSRNEKRTDAKKEDAPSDKHAIAGGGRTAFERENDSRDKWRPRHRL
EVHAGGSASYRSAPGFGLERGRVERSNVGFAAGRGRPNSNGSLQIGRPQSASVIGALPVD
KNMTLNAYSYPRGKLLDMYRKQRTAPNFDNLPDEMDHLSTVTQKEIVVPLAFVPPDAEEE
AVLGDIWKGKTISSEVVYNSFMDASEGKECFSVNMKDSVEPGEKAAVNNNFEGSHAETFY
VSDSQMIMSKEMNSSKEGVQRCMPPSDVDVTNALGSDREMGGSTNYMDELKSFDNRQVAD
LKIQKGSNVKNNGSSMKFGGGELPEDSSSLFGFPSLQPTLGCNSINVEGNIPAHSLESAM
PPEDMSLCYLDPQGVIQGPYLGIDIISWFEQGYFGTDLPVRLANAPDGSPFQELGEVMPH
LRRNPGSASSVSAVTRMRVPDRFEGSLEETISSSAPAPAPAQGSAIGHEQQQSLSPFEAS
GTNFHLRGPSQSYHSEHQFYEDPNIHNFAVAQADEIFFPGRPGSAGADHLKVSAEMQDPL
RHPASHLSIANEFSKTNAPHRGDELLPEAWSDDHRRNAVFNPNIHLGTSGARPLSHREQE
HNGLDLVQHLMSQKLPNEPLQEKNNFFHGLPHSTGFGVENIHSFDLMQSKNLNHQQSVHH
SAPHMEHVLELQFEQQRQLELQRQQRQLELQRQQQLEHQRQQQLEHQRQQQLEHQRQQQL
EHQRQQQLEHQRQQQLEHQRQQQLELQQQQRLLELQRQQQLELQQHQRQLELQRQQELHH
HQNELLQQLQQQHLQQQNSQAQQILLDQLLQHQISDPGYGQDVFDAARDIQLDQVQLQRH
LLSELQNNSQASRHLDPSLEQIIQAKINQSAVQGQQADFLDFMSQAKYGNMLPLEHQLRL
QREQFQVQQLSRALSQQLGIEEDRQLAGSLSVDEVGQFVRNPGIHPQAQSMELNGSDLHQ
KRLSSFEEQISNIKRNHALREQQQRVTFDPSPTAFARSAHSAAAPGMKVDNVNSLDLAEH
LYMHSNNQLGPFSSGNHTFSQQTLGDAYASRPDLVYHSGKNEQLENSWGGKQMQQLNLEA
DLQRRESEVDSSTWASAGGIHEKSKKALMDLLHQKLGIQSTRSSEGDYQYSTSSSRGRES
FWPVSEPQASHFPFTHFSNQEVHVNNSYLEGPQNSNSGALLQDHLFGVAASGGVNQVANC
ERMPHKSNPGSFAVDQSLLLGAEDLSSSSYADASLVSKSAVDKELGELEGKEKKNGLKSM
LSRTGSVSGSEDNILEQVEMPLDCADLQSRTHIRHDSLSTGGNGRLYSNEIGLEKSVEDP
PNDRLLSGVPKGVDKVAQISSSQDVFSDQNTVPFVKQKSLTSQAKRTVETEASGKIDVSM
RRTSSYNEAALSEASFMEILKKPALHGAEVPVYGSAFEPPSSDGASQAGRSGKKKGKKGR
QIDPALLGFKVTSNRILMGEIQRLDD
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggaaaactcgatctacccgatgatctcttaccctcaaaaatcggctctgac
cacttcgctaaagatgaagcttgggataggaacttggaggagaaaggactgactgggcta
cttgatgacaacaaagatcaaccaacttcggagagcagcatacctctgtccccacagtgg
ctctactctaaagtagctgaagcaaagacattaactgttggagcatctggggatacaaaa
gctccgaatttgttgcctcatggaacccctggtgacccaaatctgaaagatagttggcgt
ttagatagttctcaggacaagaaagaatggaggaggactgcacctgatcttgaaggcagc
cgacattggcgtgaagaggagagggaaacaagcttacttggtcgaagagatcgcagaaaa
gaagatcgtcgcactgatatttcttcaacaatggatgttcctgaaaataggactttgttg
ccttcagaacggcgtcaagatgttagtaatcgtagttcagggcatgaatctcgaaggggc
aacaagtggtcttcgagatggggtcttgaagacaaagaaaaggattctcgaaatgagaag
aggacagatgctaagaaggaagatgccccttctgacaaacatgcaattgctggtggggga
cgcacagcttttgagcgcgagaacgattctcgtgataaatggaggccacgtcatcggttg
gaagttcatgcaggtgggtctgcttcttaccgcagtgctccaggatttggtttggagagg
ggacgagtggagagatcaaatgtgggttttgcagcaggacgaggaaggccaaattccaat
gggagcctacaaattgggaggccacaatctgcttctgttattggagctcttcctgtggat
aaaaacatgacccttaatgcatattcctacccaagaggaaaactccttgacatgtaccgc
aaacaaaggactgctccaaattttgacaacctacctgatgagatggatcatttatccaca
gtaacacaaaaagaaattgttgtgcctttggcatttgttccgcctgatgcagaggaagag
gctgtccttggagatatatggaaaggaaaaacaataagcagtgaagtggtctacaactca
tttatggatgcaagtgaaggaaaagagtgtttctcagttaacatgaaggatagtgttgaa
cctggtgagaaggctgctgtaaacaataattttgaggggagtcatgctgagacattttat
gtgtcagattcacagatgattatgagcaaggaaatgaatagttcaaaagaaggtgtacag
agatgcatgccaccatctgatgtagatgtaaccaatgctttggggtcagatagggagatg
ggtggttcgacaaattacatggatgaattaaaatcttttgataatcggcaagtagctgat
ttgaaaatacaaaagggctctaatgtgaaaaacaatggatcatccatgaaatttggaggg
ggcgagcttcctgaagactcaagttctctgtttggttttccgtcactacagcctactcta
ggctgtaactcgataaatgttgagggcaatattcctgcacattcactggaaagtgctatg
cctcctgaggatatgagcctgtgctatcttgatcctcaaggggtaattcagggaccgtat
ttggggattgacataatttcatggtttgagcaaggttattttggtacagatttacccgtt
cgattggcaaatgctcctgatgggtcacctttccaagaacttggtgaagtcatgcctcac
ctaagaaggaatcctggttcagcctccagtgttagtgcagttaccagaatgcgagtacct
gatcgttttgaagggagcttggaagagaccatatcttcttctgctcctgctcctgctcct
gctcagggatctgccattggacatgagcagcagcaatctttgtcaccttttgaggcatct
ggtactaactttcatttaagagggccttctcaaagttatcattctgagcaccaattttat
gaagatccaaacatccataattttgctgttgctcaagctgatgaaatcttttttccagga
aggcctggaagtgctggtgctgaccatttgaaagtttctgctgagatgcaagatcctttg
cgtcatcctgcaagtcatttatccattgcaaatgaattttcaaaaaccaatgcacctcat
cggggtgatgagttgctcccagaggcttggtctgatgatcatagaagaaatgctgtgttt
aatcctaacattcatctaggcactagtggtgctaggccattatctcacagggagcaagaa
cacaatggtttggacctggtacagcacttaatgtcacaaaagttgcccaatgaacctctg
caagagaaaaataatttctttcatggccttccacattcgaccggatttggtgtggagaac
atccatagttttgatctgatgcagagcaagaatctcaaccatcagcagtcagtccatcat
tcagctccgcatatggaacatgttttggaacttcaatttgaacagcagcggcagttggaa
ctacaacgccagcagcgtcagttggagcttcagaggcagcagcagttggagcatcagcgg
cagcagcagttggagcatcagcggcagcagcagttggagcatcagcggcagcagcagttg
gagcatcagcggcagcagcagttggagcatcagcggcagcagcagttggagcatcagcgg
cagcagcagttggagcttcagcagcagcaacgtctgttggagcttcagcggcagcagcag
ttggaacttcagcagcatcaaagacagttggaacttcagcggcagcaggagcttcatcac
caccaaaatgaactgttgcagcagttgcaacaacaacatctacagcagcagaattctcaa
gctcaacagattcttcttgatcaattgctccagcatcagatttctgatcctggctatggt
caggatgtatttgatgctgctagagacatccaacttgatcaggttcagttacaaaggcat
cttctaagtgaattgcagaataattctcaagcatcaaggcacctggatccatcactggag
cagatcatccaagcaaagattaaccagagtgcagtccaagggcaacaggctgattttttg
gatttcatgtcgcaagcaaagtatggcaatatgcttcctttggagcatcagctccgtctt
caacgagagcagtttcaagtacagcagttatctagggcgctgagccaacaattaggaata
gaggaggatagacaacttgctggttctttgtctgtagatgaagttggtcaatttgttagg
aatcctggcattcatccccaggctcaatcaatggagttgaatggttcagatcttcaccag
aagaggctttcatcttttgaagagcaaatcagcaatattaaaaggaatcatgctttgcgg
gagcaacagcagcgagtaacttttgaccccagccctacagcatttgccaggtctgctcat
tctgctgctgctcctgggatgaaagtagacaatgtaaattctctagatcttgctgaacat
ctctatatgcactctaacaaccaactgggtccattttcttctggtaaccacacttttagc
caacaaactttgggtgatgcatatgcatctcgtccagatttagtctaccactctgggaaa
aatgagcagctagaaaatagttggggtggaaaacagatgcaacaattaaatcttgaagca
gatttgcaaagaagggagtctgaagttgattcaagcacttgggcatcagctggagggatt
catgaaaagtctaagaaagctttaatggaccttcttcaccaaaaacttggtattcaatcg
acaaggtcatcagaaggagattatcagtattctacttcatcttccagaggcagggaaagc
ttttggcctgtttctgagccacaagcttcccattttccttttactcatttctcgaatcag
gaagttcatgtaaacaactcatatctggaaggccctcaaaattccaattcaggtgcctta
ttgcaagatcatttgtttggagttgctgccagtggtggtgtcaaccaggtggctaactgt
gaacgaatgcctcataaatccaatccgggttcttttgctgtagatcagtcattgttgttg
ggcgctgaagatctgtcttctagtagttatgcagatgctagcttagtgtcaaaatctgct
gtggataaggaattgggcgaactggaggggaaggagaagaaaaatggattgaaaagcatg
ctttcaaggactggttctgtgtcggggtctgaggacaatattttagagcaagtagagatg
cctttggactgtgctgacctacaaagtagaacccatatccgtcacgattcacttagtacc
ggtgggaatggcaggttgtacagtaatgaaattggattagagaaatctgtagaagaccct
cctaatgataggttactgtctggagtgccaaaaggggttgataaagttgcacagatttca
tcatcccaggatgtattttccgatcaaaacacagtgccatttgtgaagcagaaaagcctt
acaagtcaggcaaagaggacagtagaaacggaggcatcgggcaagatagatgtgagtatg
agaaggacctcatcttataatgaggctgcactgtctgaagcatcattcatggagattctt
aagaagccggctcttcatggggcagaggtccccgtgtatggctctgcttttgagccacca
tcatctgatggtgcttcacaagctggacgaagtggcaagaaaaaagggaaaaagggaaga
caaattgatcctgccttgcttggttttaaggttacaagcaaccgtattttgatgggtgag
atccagcgtcttgacgattaa
DBGET
integrated database retrieval system
