Gossypium hirsutum (upland cotton): 107923863
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Entry
107923863 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107923863 isoform X1
KO
K24155
rabconnectin-3a
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
107923863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107923863
Membrane trafficking [BR:
ghi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
107923863
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
107923863
RAVE complex
107923863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WDR55
Beta-prop_EML
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
EIF3I
ANAPC4_WD40
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
107923863
NCBI-ProteinID:
XP_016709508
UniProt:
A0A1U8L7Z6
LinkDB
All DBs
Position
D11:complement(9183259..9196247)
Genome browser
AA seq
2568 aa
AA seq
DB search
MFPLQHWKDMAGAWATSTSQNATSISEVDPTDHLPLSLLRSELIPPAPNRSESAIDWLPD
FAGYSWAAYGSSSLLVISHFPSPLSSEQTRMGSIFRQVFEISSVASSPVTAVSWSPVTPS
SGELAVASDNCICLFSHDSATPNPKGSFCWSQNAVLLQSTKVEAVGWTASGDGLIAGGLE
VVLWKRKSKSWEIAWKFKADQPQNMVSASWSIEGPSAAASSSKDLQIEGVNEASKSVLVF
YSDGSSGFAKTVLGHPQPVSMLQWRPSAGKQLLRDGKHFRRHILLTCCLDGTIRLWSEID
NVRVKKAGSVYDQKTTRRSFCVAAVIEIDNALRGTLGADISFTWAMEIGGMVKTTEETNQ
YFFREEHKNEVGSCEWLIGFGPGKLVTFWAIHCLDDISPMRFPRVTLWKRLELQGLEVEH
LNRNGLSTLKQQLLLKKVVIMRNCASGPPTVCSSIHLYPCKYLAWSMLYTQMINDTENAP
TSESRTENLLSCSVEGILDIDGHTSRILQVAIHPYVCEVDLVVSLDSNGLLLFWSLSNNS
NAILDLPTLIPAWRISGKHVTHGKCSKYSSLNWAPLVLGEDRFLLLGHVGGIDCFAVKNF
HGEGDGIECYFICTIPFAGHDPYEDGPTNIYTVPLSLSRNETYMCDGFLLLGIWMKIFRA
LSWEITMHAYDLTRSCSECNFNDDNIVECNARKFEKTISGTRYCLHVIPSSAQLPEPHLH
DQVTSFAVISPGGLTPVQQKLPFHKDSLSCRSPAYVMATGCSDGSIKLWRRSPNEPSISH
KSWELVGMFSAHQGPVTAIRLTSCGRKIATTGSDSPSNTVFNLRIWDSIRLPDSGTFMLE
DTLSLDEDVVVLNWLALGNGQLLLAVCMRNELRVYAQKRCGGHALLDSKQSPGVQFWFCI
GISHTFSAIHDFLWGPRTTGVVVHASYLSLLSPWLFLLDNKHQTDFYKKFNPESLLDSDI
DMGKDTFSEIFSDHDVVNHKETLIANSNGGCKYDLLKKINTNNGHLSSAFLVGRGQIKCK
SKILLGYWSMLDIVATLARVLPVYHPESLFANIYSGNRKRAYISVKHLVEYLNSSHISEK
RGHHPKISDIVPQMPLSDYIEGILSKSSTGNAFQWNENATSMTLSSQFQSGLVPFAYNFE
PNASSNAFSSSSTKSGLIDFLEPINKLHELAAITATEKMQILAIVDLLNEVSNPQSASVY
ENLDEPGRRFWVTLRFQQLLFLQRFGRSASLEDLVVDSGLIAWAFHSDCQETLFGSFLPN
EPSWPAMRTLGVGFWFTNATQLRTRMEKLARMQYLKKKDPKDCTLLYVALNRLQVLAGLF
KISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLMGRHQLELAIAFFLLGGDTSSAVTV
CAKNLGDEQLALVICRLVEGRGGPLERHLITKLILPSAIERSDYWLASLLEWELGNYSQS
FLTMLGLQVGSAIGSSTLSSCHVAFMDPSIGLYCLMLANKTSLRNAAGDQNAGVLARWAS
LMTATSLNRCGLPLEALECLSSSLSILGGMDQENVSDFACSKTSLGILKPSIGGSSPWLL
GGVASHLESYAKFDLALQYISKLMREHPSWPRTSFGSVRANTCSEDYENQYDELLENFHH
KLHTGLAQFEHKFSLVSSYLINMIFVTLCNNGFWFLGYDMLHGFCHEHSQHENHMDDNAV
WYPLFHKPLLKLTEDISSLFSHFLAICCTTWSPSKLCYRENGISHEGRSNSGDTWGFYFQ
GVKLSLSSLRAAMRIFSGIFKEVMSPKLLTLLDLYEFYANFASAWLQKNSEGLVLMMQPL
IVTYTSGHTPYEVDMTALKETLNQVPDTVTDVLIDGLEVDRCAEEKLVGELLNLIPEDER
WHIIGAFLWQHMSRFMKHKLNSLAISDDSYLSGFSNDKLSSCAPLSLDVGLGNRSIRENI
RSASWILANLLKIALEHISSHHVKQLGLFLQQKIDNGFNPPTLGWLEEYRLSSRTLHQHL
GQTKDTNSTNQLSASDILWNMCADPTMISESFAQEKVNWSSFLHFKPCRGWDDLYKDIRR
ENETDESQNHEGKISNSSSGGEAGSPSRSVLRNGHAFLSSWQKGTSTEKEVIPFQNPKEI
YKRNGELLEALCVNSINQRQAALASNRKGIIFFNWEDGLPYKGQSDYIWSGADWPHNGWA
GCESTPVPTCVSPGVGLGNQKGAHLGLGGATIGVDTFSRPGRHPTGGGAFGIPGYAGIGA
SGLGWETQEDFEEFVDLPATVENISTRSFSSHPSRPLFLVGSINTHIYLWEFGKDKATAT
YGVLPAANVAPPYALASISALQFDRCGHRFVTAALDGTVCTWQLEVGGRSNIRPTESSLC
FNNHASDVTYITSSGSVIAAAGCSSNGVNVVIWDTLAPSATSRASIVCHEGGARSIAVFD
NDIGSGSVSPLIVTGGKNGDVGLHDFRYIATGRTKRHRHHDSVEISINTSSNADMKKGAS
KQGDQNHGGMLWYIPKAHLGSITKISTIPNTSLFLTGSKDGDVKLWDAKAAKLVHHWSKL
HERHTFLQPSSRGFGGVVRAAVTDIQVVSHGFLSCGGDGSVKLVQLND
NT seq
7707 nt
NT seq
+upstream
nt +downstream
nt
atgttccctcttcagcattggaaggacatggctggcgcatgggcaacttccacttctcaa
aacgcaacctccatttccgaggtggatcccaccgatcacctcccgctgtccctccttaga
tctgagctcatcccgcctgctcctaatcgatccgaatccgccatagactggttacctgac
tttgccggttactcatgggcagcttacggatcctcctcccttctcgtgatctctcacttc
ccttctcctctctcctccgaacaaactcgtatgggctcaattttccgtcaagtcttcgag
atctcttctgtcgcttcttcccctgttaccgccgtttcgtggtctccggtcacgccttct
tctggtgagctcgcagtggcctcggataattgcatttgcttgttctctcacgactcagcg
acgcccaatcccaaaggttctttttgttggagccagaatgcagtacttttacagtctact
aaagttgaggcagttggatggacggcttctggggatgggctaatagccggtggactggag
gttgttttgtggaaaaggaagagtaaatcttgggaaatagcttggaaattcaaagcagat
cagcctcagaatatggtttctgcctcctggtcaatagaaggcccttccgcagctgcatct
tcttcaaaggatttgcaaattgaaggagtcaatgaggcaagcaagtctgttttggtattt
tacagtgatggaagttctggatttgcaaaaactgtgctaggccatcctcaacctgtttca
atgcttcaatggaggccatcggcagggaaacaactgttgagagatggaaaacattttcgg
agacatatattgttaacatgctgtttagatggaactataagattatggagtgagatagac
aatgttagagttaagaaagcaggcagtgtttacgatcagaaaactacaaggaggtcattt
tgtgttgctgctgtaattgagatagataatgcattacgtggaactttgggagcagatata
tcttttacatgggcaatggaaattggtggtatggttaaaaccactgaagaaactaaccaa
tacttctttagagaagaacataagaatgaagttggcagctgcgagtggttaatagggttt
ggccctggaaaattggttactttctgggcaatccattgtcttgatgacatatcaccaatg
aggttcccccgggttacattgtggaagagactggagcttcagggccttgaagttgaacat
cttaatagaaatggactttcaactctaaagcaacaattgcttcttaaaaaggttgttatc
atgagaaattgtgcgtctggacccccaactgtatgctcttctatccatttatatccgtgt
aaatatttggcctggtccatgttatatacccaaatgataaatgatacagagaatgcacct
actagtgaatctaggactgaaaatttattatcatgttcagtagaaggaattttagatata
gatggtcataccagtagaatcttacaagttgctatacacccctatgtttgtgaagttgat
ttggttgtttctttggattctaatgggctacttctgttttggtcactttctaacaattcg
aatgccattcttgaccttccaacattgattcctgcatggagaattagtggaaagcatgta
acccacggtaaatgttctaaatattcaagcttgaattgggcacctttagtattgggtgaa
gatcggtttcttcttctgggacatgttggaggaattgactgctttgcagtaaagaatttt
catggtgaaggagatggcatagaatgttacttcatatgcactataccttttgcaggtcat
gatccttatgaggatggtccaaccaacatatatacagtaccattgtctttgtctcgtaat
gaaacttatatgtgtgatggatttttacttttgggcatttggatgaaaatatttcgggct
ctttcctgggaaataaccatgcatgcttatgatctgacaagaagctgctctgaatgtaat
ttcaatgatgataatattgttgaatgcaacgcaaggaaatttgaaaaaactatttctggc
acaagatattgtcttcacgttattccatcatcagcacagttgcctgaacctcatcttcat
gatcaggtcacaagttttgctgtgatctctcctggtggtttgacacctgtgcagcaaaag
ttaccttttcataaagattccttaagttgtagaagtcctgcatatgttatggccacaggc
tgctctgatggtagtataaaattgtggagacgtagccccaatgaaccatcaatttctcac
aaatcatgggaacttgtgggcatgtttagtgcacatcaaggacctgtcactgctatacga
ttgaccagttgtggtaggaagattgcaaccactggctcagatagtccgtcaaatactgtc
ttcaatcttcgtatatgggactctatacgcctaccagactcggggacttttatgttagaa
gacacattgtcacttgatgaagacgttgttgttttaaattggttagccctaggaaatggt
cagttattacttgcagtttgcatgcgcaatgagttgcgtgtatatgctcagaagcgatgt
ggtggtcatgctttgttagactctaaacaatctccgggtgtgcaattctggttttgcatc
gggatcagtcatactttttctgctattcatgatttcttgtggggccccaggactacaggt
gtggttgtgcatgctagttacttgagtcttttaagtccatggctgtttcttttagataac
aaacatcagactgatttctataaaaaatttaacccagaaagccttcttgattctgatatt
gatatgggcaaggacacattttctgaaatttttagtgatcatgatgttgttaatcacaaa
gaaacattaattgcaaatagtaatggaggatgcaagtacgaccttcttaagaagataaat
accaacaatggtcacctatccagtgcatttttagtgggaaggggtcaaataaaatgcaag
tcaaagattttactcggttactggagtatgctagacatagtggcgacattagccagagtt
ttgcctgtttatcacccggagtcactctttgcaaatatatattcaggcaatcggaaacgt
gcatacatctctgtgaagcatctggttgaatatcttaattccagtcatatttccgagaag
agaggtcaccatccaaagatcagtgacattgttccgcagatgcctttatctgattacatt
gaagggattctctccaaaagttcaactggtaatgcattccaatggaatgagaatgctact
tcgatgacattgtcttcacaatttcaaagtggcttggtgccgtttgcttataattttgag
cctaatgcttccagcaacgcattcagctcgtcttcaacaaaatctggacttattgacttc
cttgaaccaatcaataagttgcatgagttggcagctataactgccacagagaagatgcag
attcttgcaatcgtagatcttctaaatgaagttagcaatccacagtctgcttctgtttat
gaaaatcttgatgaaccaggtcgaaggttttgggtcacattaaggtttcagcagctgctt
tttttgcaaaggtttggtagatcagcatctttggaagatcttgtggttgactcagggctt
atagcatgggcattccactccgattgccaggaaactctgtttggttcatttctaccaaat
gaaccatcttggccagcaatgcggacgttgggcgttggattttggtttactaatgcaact
caactgcgcacaaggatggaaaagctggctagaatgcaatatcttaagaagaaagatccc
aaggattgtacactgctgtatgtagcattaaatagacttcaggttttggctggtctattt
aaaattagcaaggatgagaaggataaaccattggttggatttctttcacgcaattttcag
gaggagaaaaataaggcggcagctttgaaaaatgcttatgtcttgatggggagacatcaa
ctagagttggctattgctttttttctgcttggaggtgatacttcttctgcagttactgtt
tgtgcaaagaaccttggggatgagcagctagcactagtaatatgtagacttgtcgagggg
cgaggtggaccattagagcgtcacttgattactaagcttatacttccatctgcaattgag
agaagtgactattggcttgcaagccttctagagtgggaattggggaactactctcaatct
ttcctgaccatgcttggtttacaagtgggttctgctattggttcatccactctttcatcc
tgccatgttgctttcatggaccccagtataggtctgtattgcctcatgcttgcaaacaaa
actagcctgagaaatgctgcaggggaccagaatgctggagttcttgctagatgggcatct
ttgatgactgctacttccttgaacagatgtgggcttcctcttgaagccttggagtgcctt
tcatcttccctgagtattctggggggtatggatcaagagaatgtatcagattttgcatgt
tctaaaacttcactgggaattttgaaaccttctattggtggttcctctccttggctcttg
ggtggtgttgcttctcatcttgagtcctatgctaaatttgatttggccctccagtatatc
tcaaaattgatgagggagcatcctagttggcctagaacctcctttggatctgttagagca
aacacatgttctgaggattatgagaatcaatatgatgaactacttgaaaattttcaccat
aagttgcacacaggacttgcacagtttgagcataagttctcgttggtttcatcctatcta
attaatatgatttttgtcaccttatgcaataatgggttctggttccttggatatgatatg
ttacatggattttgtcatgaacactcccagcatgagaatcatatggatgacaatgccgtt
tggtatcctcttttccacaagccacttttgaagttgactgaggatatctcctctttgttt
tcgcattttcttgctatctgctgcacaacatggtccccatcaaaattatgttatagagaa
aatggtatatcccatgaaggtagatccaactctggagatacctgggggttttattttcaa
ggggtcaaactctcactgtcgagtttaagagcagctatgaggatcttctctggcatcttc
aaagaggtcatgtccccaaaacttctcacccttcttgatttgtatgaattttatgcaaat
tttgcatctgcttggcttcagaaaaattcagaaggtttagttttgatgatgcaacccctc
atagttacatatactagtgggcatactccttatgaagttgatatgacggctttgaaggaa
acgttaaaccaggttccggatacagtgactgatgttttaatagatggccttgaggttgat
agatgtgctgaggaaaaactagttggagagctattgaatttgattccagaggatgagaga
tggcatattataggggcttttctgtggcaacacatgtccagattcatgaaacataagttg
aactcattagccatttctgatgacagttatctttctggcttttccaatgataaactttct
tcttgtgctcctttatcattggatgttggattaggtaacagaagcataagagaaaacatt
aggtcagcatcatggatattagccaacttactgaaaattgcccttgaacatatttcttct
caccatgtgaaacaacttgggttgttcttgcagcagaaaatagataatggatttaaccct
cctactcttggttggttggaggagtatagattgtcttctaggactctacatcagcatctg
ggtcagactaaagatacaaacagcacaaatcagctttctgcttctgatatcttatggaat
atgtgtgctgatcctactatgatatcagaaagttttgcacaagagaaagtaaattggtca
agttttcttcattttaagccttgcagaggatgggatgatttatacaaagacattaggagg
gagaatgaaactgatgagtcccaaaatcatgaaggcaaaataagcaatagctcttctggt
ggtgaagctggatcaccttctaggagtgtgttacggaacggccatgcttttttaagttcc
tggcagaaaggaacaagcacggaaaaggaggtcatacctttccaaaaccctaaagaaata
tataagagaaatggggagcttctagaggcattgtgtgtcaactccattaatcaaaggcaa
gctgcattggctagcaaccgaaagggcataattttctttaactgggaagatggtttacct
tacaaaggccaatcagattatatctggtctggtgcagattggccacacaatggttgggct
ggttgtgaatcaactccagttccaacctgtgtatctcctggtgttggtcttggtaatcag
aaaggggctcacctaggactgggtggggcaaccattggtgtggatactttttctagacca
gggagacacccaacaggtggtggagcatttggaattccaggttatgctggtatcggagcc
tctggcttaggctgggagacacaagaggattttgaggagtttgttgatctgcctgccact
gtggaaaacatcagtacgaggtctttctctagtcatccctcaaggcctttattcctggtt
ggttctatcaatacacatatttacttatgggagtttgggaaggataaagcaacagcaact
tacggagtgctgcctgctgcaaatgttgctccaccttatgctcttgcctcaatatcagct
ttgcagtttgaccgttgtggacacagatttgttactgctgctcttgatggaactgtttgc
acgtggcaactagaggtgggaggcaggagcaatatccgtccaaccgaatcatctctctgc
tttaataaccatgcatcggatgtcacttacattacttcaagtggatctgtcattgctgct
gctggatgtagctccaatggtgttaatgtggttatatgggatacattggctccgtctgca
acctctcgagcttccattgtttgccatgaaggtggtgcccgctccattgcagtgtttgac
aatgacatcggaagtggttctgtttctcccctaatagtaaccggtggtaaaaatggtgat
gttggacttcatgacttccggtacatagctactggaaggactaaaaggcacaggcaccat
gatagtgttgaaataagcatcaacacatcttctaatgctgacatgaaaaaaggagctagt
aaacaaggagaccaaaatcatggtgggatgctttggtacataccaaaggctcacttaggt
agcatcaccaaaatttctaccatcccaaataccagtttgttcttaacgggaagcaaagat
ggagatgttaaactttgggatgccaaagcagccaaactggttcatcattggtcaaaattg
catgaaaggcacacctttttgcaaccaagttcccgtggtttcggtggcgttgtgcgggct
gctgttactgatattcaagttgtgtcacatggttttctttcatgtggtggagatggctct
gtaaaactggttcaactcaatgattaa
DBGET
integrated database retrieval system
