Gossypium hirsutum (upland cotton): 107923883
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Entry
107923883 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107923883 isoform X1
KO
K24155
rabconnectin-3a
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
107923883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107923883
Membrane trafficking [BR:
ghi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
107923883
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
107923883
RAVE complex
107923883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WDR55
Beta-prop_EML
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
107923883
NCBI-ProteinID:
XP_016709540
UniProt:
A0A1U8L4J9
LinkDB
All DBs
Position
A11:complement(9837261..9850346)
Genome browser
AA seq
2556 aa
AA seq
DB search
MAGAWATSTSQNATSISEVDPTDHLPLSLLRSQLIPPAPNRSESAIDWLPDFAGYSWVAY
GSSSLLVISHFPSPLSSEQTRMGSIFRQVFEISSVASSPVTAVSWSPVRPSSGELAAASD
NCICLFSHDSATPNSKGSFCWSQNAVLLQSTKVEAVGWTASGDGLIAGGLEVVLWKRKSK
SWEIAWKFKADQPQNMVSASWSIEGPSAAAFSSKDLQIEGVNEASKSVLVFYSDGSSGFA
KTVLGHPQPVSMLQWRPSSGKQLLRDGKHLRRHILLTCCLDGTIRLWSEIDTVRVKKAGS
VYDQKTTRRSFCVAAVIEIDNALRGTLGADIFFTWAMEIGGMVKTTEETNQYFFREEHKN
EVGSCEWLIGFGPGKLVTFWAIHCLDDISPMRFPRVTLWKRLELQGLEVEHLNRNGLSTL
KQQLLLKKVVIMRNCASGPPIVCSSIHLYPCKYLAWSMLYTQMINDTENAPPSESRTENL
LSCSVGGILDIDGHTSKILQVAIHPNVCEVDLVVSLDSNGLLLFWSLSNNSNAIHGLPTL
IPAWRISGKHVTHGKCSKYSSLNWAPLVLAEDRFLLLGHVGGIDCFAVKNFHGEGDGIEC
YFICTIPFAGHDPYEDGPTNIYTVPLSLSRNETYMCDGFLLLGIWMKEFRALSWEITMHA
YDLTRSCSECNFNDDNIVECNAKKFEKTISGTRYCLHVTPSSAQLPEPHLHDQVTSFAVI
SPGGLTPVQQKLPFHKDSLSCRSPAYVMATGCFDGSIKLWRCSPSEPSISHKSWELVGMF
SSHQGPVTAIQLTSCGRKIATTGSDSPSNTVFSLRIWDSICLPDSGTFMLEDTLSLDEDV
VVLNWLALGNGQLLLAVCMRNELRVYIQKRCGGHALLDSKQSPGVQFWFCIGISHTFSAI
HDFLWGPRTTGVVVHASYLSLLSPWLFLLDNKHQTDFYKKFNPESLLDSDIDMGKGTFSE
IFSDHDVVSHKETLIANSNGGCKSDLLKKINTNNGHLSSAFLVGRGQIKCKSNILLGYWS
MLDIVERVLPVYHPESLFANIYSGNWKRAYISVKHLVEYLNSSHISEKRGYHPKISDIVP
QMPLSDYIEGILSKSSTVNAFQWNENATSMTSSSQFQSGLFPFAYNFQSNASSNAFSPSS
TKSGLVDFLEPINKLHELAAITATEKMQILAIVDLLNEVSNPQSASVYENLDEPGRRFWV
TLRFQQLLFLQRFGRSASLEDLVVDSGLIAWAFHSDCQETLFGSFLPNEPSWPAMQTLGI
GFWFTNATQLRTRVEKLARMQYLKKKDPKDCTLLYVALNRLQVLAGLFKISKDEKDKPLV
GFLSRNFQEEKNKAAALKNAYVLMGRHQLELAIAFFLLGGDASSAVTVCAKNLGDEQLAL
VICRLVEGRGGPLERHLITKLILPSAIERSDYWLASLLEWELGNYSQSFLTMLGLQGGSA
IGSSTLSSCHVAFMDPSIGLYCLMLANKTILRNAAGDQNAGVLARWASLMTATSLNRCGL
PLEALECLSSSLSILGGTDRENVSDFACSKTSLGILKPSIGGSSPWLLGGVASHLESYAK
FDLALRYISKLMREHPSWPRTSFGSVRANTCSEDYENQYDKLLENFHHKLHTGLAQFEHK
FSLVSSYLINMIFVNLCNNGFWFLGYDMLHGFCREHSQHENHMDDNAFLYPLFHKPLLKL
TEDISSLFSHFLAVCSTTWSPSKLCYRENGMSHEGRSNSGYTWGFYFQGVKLSLSSLRAA
MRIFSGIFKEVMAPKLLTLLDLYEFYANFASAWLQKNSEGLVLMMQPLIVTYTSGHMPYE
VDMMALKETLNQVPDTVTDVLIDGLEVDKCAEEKQVGELLNLIPEDERWHIIGAFVWQHM
SRFMKHKLNSLAISDDSFLSGFSNDKLSSCAPLSLDVGLGNRSIRENIRSASWILANLAK
IALEHISSHHVKQLGLFLQQKIDNGFNPPTLGWLAEYRLSSRTLHQHLGQTKDTNSTNQL
SASDILWKMCADPTMISESFAQEKVNWSSFLNFKPCRGWDDLYKDIRRENESDESQNHEG
KISNSSSGGEAGSPSGSVLRNGHAFLSSWQKGTSTEKEVIHFQNPKEIYKRNGELLEALC
VNSINQRQAALASNRKGIIFFNWEDGIPYKVQSDYIWSGADWPHNGWAGCESTPVPTCVS
PGVGLGNQKGAHLGLGGATIGVDTFSRPGRHLTGGGAFGIPGYAGIGASGLGWETQEDFE
EFVDLPATVENISTRSFSSHPSRPLFLVGSINTHIYLWEFGKDKATATYGVLPAANVAPP
YALASISALEFDRCGHRFVTAALDGTVCTWQLEVGGRSNIRPTESSLCFNNHASDVTYIT
SSGSVIAAAGCSSNGVNVVIWDTLAPSATSRASIVCHEGGARSIAVFDNDIGSGSVSPLI
VTGGKNGDVGLHDFRYIATGKTKRHRHHDSVEISINTSSNADMKTGASKQRDQNHGGMLW
YIPKAHLGSITKISTIPNTSLFLTGSKDGDVKLWDAKAAKLVHHWSKLHERHTFLQPSSR
GFGGIVRAAVTDIQVVSHGFLSCGGDGSVKLVQLND
NT seq
7671 nt
NT seq
+upstream
nt +downstream
nt
atggctggggcatgggcaacttccacttctcaaaacgcaacctccatttccgaggtggat
cccaccgatcacctcccgctttccctccttagatctcagctcatcccgcctgctcccaat
cgatccgaatccgccatagactggttacctgactttgccggttactcatgggtagcttac
ggatcctcctcccttctcgtgatctctcacttcccttctcctctctcctccgaacaaact
cgtatgggctcaattttccgtcaagtcttcgagatctcttctgtcgcttcttcccctgtt
accgccgtttcgtggtctccggtcaggccttcttctggtgagctcgcagcggcctcggat
aattgcatttgcttgttctctcacgactcagcgacgcccaattccaaaggttctttttgt
tggagccagaatgcagtacttttacagtctacaaaagttgaggcagttggatggacggct
tctggggatgggctaatagccggtggactggaggttgttttgtggaaaaggaagagtaaa
tcttgggaaatagcttggaaattcaaagcagatcagcctcaaaatatggtttctgcctcg
tggtcaatagaaggcccttccgcagctgcattttcttcaaaggatttgcaaattgaagga
gtcaatgaggcaagcaagtctgttttggtattttacagtgatggaagttctggatttgca
aaaactgtgctaggccatcctcaacctgtttcaatgcttcaatggaggccatcgtcaggg
aaacaactgttgagagatggaaaacatttgcggagacatatattgttaacatgctgttta
gatggaactataagattatggagtgagatagacactgttagagttaagaaagcaggcagt
gtttacgatcagaaaactacaaggaggtcattttgtgtagctgctgtaatcgagatagat
aatgcattacgtggaactttgggagcagatatattttttacatgggcaatggaaattggt
ggtatggttaaaaccactgaagaaactaaccaatacttctttagagaagaacataagaat
gaagttggcagctgtgagtggttaatagggtttggccctggaaaattggttactttctgg
gcaatccattgtcttgatgacatatcaccaatgaggttcccccgggttacattgtggaag
agactggagcttcagggtcttgaagttgaacatcttaatagaaatggactttcaactcta
aagcaacaattgcttcttaaaaaggttgttatcatgagaaattgtgcgtctggaccccca
attgtatgctcttctatccatttatatccgtgtaaatatttggcctggtccatgttatat
acccaaatgataaatgatacagagaatgcacctcctagtgaatctaggactgaaaattta
ttatcatgttcagtaggaggaattttagatatagatggtcataccagtaaaatcttacaa
gttgctatacaccctaatgtttgtgaagttgatttggttgtttctttggattctaatggg
ctacttctgttttggtcactttctaacaattcgaatgccattcatggccttccaacattg
attcctgcatggagaattagtggaaagcatgtaactcacggtaaatgttctaaatattca
agcttgaattgggcacctttagtattggctgaagatcggtttcttcttctaggacatgtt
ggaggaattgactgctttgcagtaaagaattttcatggtgaaggagatggcatagaatgt
tacttcatatgcactataccttttgcaggtcatgatccttacgaggatggtccaaccaac
atatatacagtaccattgtctttgtctcgtaatgaaacttatatgtgtgatggattttta
cttttgggcatttggatgaaagaatttcgggctctttcctgggaaataaccatgcatgct
tatgatctgacaagaagctgctctgaatgtaatttcaatgatgataatattgttgaatgc
aatgcaaagaaatttgaaaaaactatttctggcacaagatattgtctccacgttactcca
tcatcagcacagttgcctgaacctcatcttcatgatcaggtcacaagttttgctgtgatc
tctcctggtggtttgacacctgtgcagcaaaagttaccttttcataaagattccttaagt
tgtagaagtcctgcatatgttatggccacaggctgctttgatggtagtataaaattgtgg
agatgtagccccagtgaaccatcaatttctcacaaatcatgggaacttgtgggcatgttt
agttcacatcaaggacctgtcactgctatacaattgaccagttgtggtaggaagattgca
accactggctcagatagtccgtcaaatactgtctttagtcttcgtatatgggactctata
tgcctaccagactcggggacttttatgttagaagacacattgtcacttgatgaagatgtt
gttgttttaaattggttagccctaggaaacggtcagttattacttgcagtttgcatgcgc
aatgagttgcgtgtatatattcagaagcgatgtggtggtcatgctttgttagactctaaa
caatctccgggtgtgcaattctggttttgcattgggatcagtcatactttttctgctatt
catgatttcttgtggggccccaggactacaggtgtggttgtgcatgctagttacttgagt
cttttaagtccatggctgtttcttttagataacaaacatcagactgatttctataaaaaa
tttaacccagaaagccttcttgattctgatattgatatgggcaagggcacattttctgaa
atttttagtgatcatgatgttgttagtcacaaagaaacattaattgcaaatagtaatgga
ggatgcaagtccgaccttcttaagaagataaataccaacaatggtcacctatccagtgca
tttttagtgggaaggggtcaaataaaatgcaagtcaaacattttactcggttactggagt
atgctagacatagtggagagagttttgcctgtttatcacccggagtcactctttgcaaac
atatattcaggcaattggaaacgtgcatacatctctgtgaagcatctggttgaatatctt
aattctagtcatatttcagagaagagaggttaccatccaaagatcagtgacattgttccg
cagatgcctttatctgattacattgaagggattctctccaaaagttcaactgttaatgca
ttccaatggaatgagaatgctacttcgatgacatcgtcttcacaatttcaaagtggcttg
tttccgtttgcttataattttcagtctaatgcttccagcaacgcattcagcccgtcttca
acaaaatctggacttgttgacttccttgaaccaatcaataagttgcatgagttggcagct
ataacagccacagagaagatgcagattcttgcaatcgtagatcttctaaatgaagttagt
aatccacagtctgcttctgtttatgaaaatcttgatgaaccaggtcgaaggttttgggtc
acattaaggtttcagcagctgctttttttgcaaaggtttggtagatcagcatctttggaa
gatcttgtggttgactcagggcttatagcatgggcattccactccgattgccaggaaact
ctgtttggttcatttctaccaaatgaaccgtcttggccagcaatgcagacgttgggcatt
ggattttggtttactaatgcaactcaactgcgcacaagggtggaaaagctggctagaatg
caatatcttaagaagaaagatcccaaggattgtacactgctgtatgtagcattaaataga
cttcaggttttggctggtctatttaaaattagcaaggatgagaaggataaaccattggtt
ggatttctttcacgcaattttcaggaggagaaaaataaggcggcagctttgaaaaatgct
tatgtcttgatggggagacatcaactagagttggctattgctttttttctgcttgggggt
gatgcttcttctgcagttactgtttgtgcaaagaaccttggggatgagcagctagcacta
gtaatatgtagacttgtcgaggggcgaggtggaccattagagcgtcacttgattactaag
cttatacttccatctgcaattgagagaagtgactattggcttgcaagccttctagagtgg
gaattggggaactattctcaatctttcctgaccatgcttggtttacaagggggttctgct
attggttcatccactctttcatcctgccatgttgctttcatggaccccagtataggtctg
tattgcctcatgcttgcaaacaaaactatcctgagaaatgctgcaggggaccagaatgct
ggagttcttgctagatgggcatctttgatgactgctacttccttgaacagatgtgggctt
cctcttgaagccttggagtgcctttcatcttccctgagtattctggggggtacagatcga
gagaacgtatcagattttgcatgttctaaaacttcactgggaattttgaaaccttctatt
ggtggttcctctccttggctcttgggtggtgttgcttctcaccttgagtcctatgctaaa
tttgatttggccctccggtatatctcaaaattgatgagggagcatcctagttggcctaga
acctcctttggatctgttagagcaaacacatgttctgaggattatgagaatcaatatgat
aaactacttgaaaattttcaccataagttgcacacaggacttgcacagtttgagcataag
ttctcgttggtttcatcctacctaattaatatgatttttgtcaacttatgcaataatggg
ttctggttccttggatatgatatgttacatggattttgtcgtgaacactcccagcatgag
aatcatatggatgacaatgcctttttgtatcctcttttccacaagccacttttgaagttg
actgaggatatctcctctttgttttcgcattttcttgctgtctgcagcacaacatggtcc
ccatcaaaattatgttatagagaaaatggtatgtcccatgaaggtagatccaactctgga
tatacctgggggttttattttcaaggggtcaaactatcactgtcgagtttaagagcagct
atgaggatcttctctggcatcttcaaagaggtcatggccccaaaacttctcacccttctt
gatttgtatgaattttatgcaaattttgcatctgcttggcttcagaaaaattcagaaggt
ttagttttgatgatgcaacccctcatagttacatatactagtgggcatatgccttatgaa
gttgatatgatggctttgaaggaaacgttaaaccaggttccggatacagtgactgatgtt
ttaatagatggccttgaggttgataaatgtgctgaggaaaaacaagttggagagctattg
aatttgattccagaggatgagagatggcatattataggggcttttgtgtggcaacacatg
tccagattcatgaaacataagttgaattcattagccatttctgatgacagttttctttct
ggcttttccaatgataaactttcttcttgtgctcctttatcattggatgttggattaggt
aacagaagcataagagaaaacattaggtcagcatcatggatattagccaacttagcaaaa
attgcccttgaacatatttcttctcaccatgtgaaacaacttgggttgttcttacagcag
aaaatagataatggatttaaccctcctactcttggttggttggcggagtatagattgtct
tctaggactctacatcagcatctgggtcagactaaagatacaaacagcacaaatcagctt
tctgcttctgatatcttatggaaaatgtgtgctgatcctactatgatatcagaaagtttt
gcacaagagaaagtgaattggtcaagttttcttaattttaagccttgcagaggatgggat
gatttatacaaagatattaggagggagaatgaaagtgatgagtcccaaaatcatgaaggt
aaaataagcaatagctcttctggtggtgaagctggatcaccttctgggagtgtgttacgg
aacggccatgcttttttaagttcctggcagaaaggaacaagcacggaaaaggaggtcata
catttccaaaaccctaaagaaatatataagagaaatggggagcttctagaggcattgtgt
gtcaactccattaatcaaaggcaagctgcattggctagcaaccgaaagggcataattttc
tttaactgggaagatggtataccttacaaagtccaatcagattatatctggtctggtgca
gattggccacacaatggttgggctggttgtgaatcaaccccagttccaacctgtgtatct
cctggtgttggtcttggtaatcagaaaggggctcacctaggactgggcggggcaaccatt
ggtgtggatactttttctagaccagggagacacctaacaggtggtggagcatttggaatt
ccaggttatgctggtatcggagcctctggcttgggctgggagacacaagaggattttgag
gagtttgttgatctgcctgccactgtggaaaacatcagtacgaggtctttctcgagtcat
ccctcaaggcctttattcctggttggttctatcaatacacatatttacttatgggagttt
gggaaggataaagcaacagcaacttatggagtactgcctgctgcaaatgttgctccacct
tatgctcttgcctcaatatcagctttggagtttgaccgttgtggacacagatttgttact
gctgctcttgatggaactgtttgcacgtggcaactagaggtgggaggcaggagcaatatc
cgtccaaccgaatcatctctctgctttaataaccacgcatcggatgtcacttacattact
tcaagtggatccgtcattgctgctgctggatgtagctccaatggtgttaatgtggttata
tgggatacattggctccgtctgcaacctctcgagcttccattgtttgccatgaaggtggt
gcccgctccattgcagtgtttgacaatgacatcggaagtggttctgtttctcccctaata
gtaaccggtggtaaaaatggtgatgttggacttcatgacttccggtacatagctactgga
aagactaaaaggcacaggcaccatgatagtgttgaaataagcatcaacacatcttctaat
gctgacatgaaaacaggagctagtaaacaacgagaccagaatcatggtgggatgctttgg
tacataccaaaggctcacttaggtagcatcactaaaatttccaccatcccaaataccagt
ttgttcttaacgggaagcaaagatggagatgttaaactttgggatgccaaagcagccaaa
ctggttcatcattggtcaaaattgcatgaaaggcacacctttttgcaaccaagttcccgt
ggtttcggtggcattgtgcgggctgctgttactgatattcaagttgtgtcacatggtttt
ctttcatgtggtggggatggctctgtaaaactggttcaactcaatgattaa
DBGET
integrated database retrieval system
