Gossypium hirsutum (upland cotton): 107923888
Help
Entry
107923888 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107923888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107923888
03012 Translation factors [BR:
ghi03012
]
107923888
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107923888
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107923888
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107923888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
AAA_30
AAA_16
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
107923888
NCBI-ProteinID:
XP_016709550
UniProt:
A0A1U8L4L0
LinkDB
All DBs
Position
A11:complement(579562..588659)
Genome browser
AA seq
1260 aa
AA seq
DB search
MGTAAAAEYSSFTWPHKQFHRLISSKQTQNPLFTKTLTSIFKCNQNPTEKGLNTRTIPPK
MSCYSAIFQGYLRTTAMSLRPASLQLNNSPKILLKPCSFSFVPRTQSPGSFRRLHLRNGL
VRCSKSGTAASSSRTIALDWRNVALPYSELQSSSYGRYAYQDVSGDDSDHEFGSPQSQSQ
MGASTLDNIDEWRWKLTMLLRNKDEQEVVSRERKDRRDFEQLSALATRMGLNSRQYAKVV
VFSKLPLPNYRSDLDDKRPQREVVLPFGLQRDVDLHLKAYLSHKAMSSGSFLDKPLIRSS
SGGIPAADEVPVNPEPFAQNSVALERILRRRSLQIRDKQQEWQESPEGQKMLEFRRSLPA
YKERDALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISA
MAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRDLRGVSHVI
VDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYYGGAPTIHIPGFTYP
VRAHFLENILEMTGYRLTPYNQIDDYGQEKMWKMQKQAQSFKKRKSQLTSAVEDVLEDAD
FRGYSLRTRESLSCWNPDSVGFNLIEHVLCHIVRKERPGAVLVFMTGWDDINSLKDKLQA
HPFLGDPSKVLLLACHGSMPSSEQRLIFEKPEDGVRKIVLATNMAETSITINDVVFVVDC
GKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPKCVYDTFADYQLP
ELLRTPLQSLCLQIKSLELGGITEFLSRALQPPELLSVQNAVEYLKIIGALDENENLTVL
GRNLSMLPVEPKLGKMLILGAILNCLDPIMTVVAGLSVRDPFLMPFDKKDLAETAKAQFA
GQEYSDHIAVIRAYEGWKEAEREQSGYEYCWKNFLSAQTLKAIHSLRKQFFYLLKDAGLV
DQNVENCNKWSHDEHLVRAVICAGLFPGICSVVNKEKSIALKTMEDGQVLLHSNSVNAEV
PKVPYPWLVFNEKVKVNAVFLRDSTGVSDSILLLFGGNISRGGLDGHLKMLGGYLEFFMK
PALAVMYLSVKRELEELVQRKLLDPTLDMHSSNELLSAVRLLVSEDRCEGRFVFGRQVTL
SSKKTATIKTPGKSEADNSKNHLQTVLARAGHGPPTYKTKQLKNNQFRSTVIFNGLDFVG
QSCSSKKLAEKDAAAQALLWLRGEDHSTSRDIDHASLLLKKSKSRRKTSVSDAKWSTKWS
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atgggaacagcagcagccgcagaatacagttcctttacatggccacataaacaatttcat
aggctcatctcttcaaagcaaacccaaaaccccctcttcacaaaaaccctaacgagcatc
ttcaaatgtaatcaaaaccccactgaaaaaggattaaataccagaacaatccccccaaaa
atgtcatgttactcggctatatttcagggttatctcaggacaaccgccatgtctctgcga
cctgcttccctccaacttaacaactcccctaaaatccttttaaaaccttgttcattttcc
tttgtccccaggacccaatcccctggttctttccggcgtttgcatttgaggaatggcctc
gttaggtgctcaaagtctgggactgctgcttcttcttccaggactattgccttggattgg
aggaacgttgccttgccttattcggagctgcaaagctctagttatggccgttatgcttac
caggatgtttccggcgatgattcggaccatgaatttgggtctccacagtctcagagtcaa
atgggtgcttcaactcttgataatattgatgaatggagatggaaattgactatgcttctt
cgcaacaaagatgagcaagaggtagtatctagggagaggaaggataggcgtgactttgag
caactttcagctctggcaacgagaatgggtttaaatagtcgtcaatatgcaaaggtggtt
gtttttagtaaacttccattgccaaattatagatctgatcttgatgataagcgtccacaa
agagaggtggtcttaccttttggcttgcaaagagatgtagaccttcacctcaaagcttac
ctttctcataaggctatgagcagtggtagctttttggataagcccttgattagatcaagt
agtggtggaatacctgctgcagatgaagtacctgttaatccagagccctttgcacagaat
agtgttgccttggagagaattcttcgacggagaagtttgcaaatacgtgataagcaacaa
gaatggcaggagtctcctgaaggccaaaagatgcttgaatttcgtagaagcttgcctgca
tataaagagagagatgcattgctaaatgctatctcacagaatcaggtggttgttgtctct
ggcgaaactggttgtggtaaaaccacacaacttcctcagtacatattagagtctgagatt
gaagctgctcgtggagcttcctgtagtattatatgtactcagcctagaagaatatctgct
atggctgtttctgaaagagttgctgctgaaagaggggagaaattgggagaatctgtcggc
tataaagtacgccttgagggaatgaaagggagagacactcgcctccttttttgtacaact
ggcattttacttaggcgactacttgttgacagagatttgagaggtgtaagtcatgttatt
gttgatgagattcatgaacgaggaatgaatgaagattttcttcttattgtgttgaaagat
ctccttccacgtcggccagagttgaggttgattttgatgagtgcaaccttaaatgccgaa
ctcttttcttcttactatggtggtgccccaacaatccatatccctggttttacatatcct
gtacgagcacattttctggagaatattctagagatgactggatacaggttaactccatat
aatcaaattgatgattatggtcaagaaaagatgtggaaaatgcagaagcaggcccaatct
tttaaaaagaggaagagtcagctaacttctgctgttgaggatgtacttgaagatgctgat
ttcaggggatatagtttacgcacacgagaatctttgtcctgttggaatcctgattcagtt
ggcttcaatctcattgagcatgttctttgccacatagtgaggaaagagaggcctggtgct
gttttggttttcatgactggttgggatgacataaattctctaaaagataagctccaggct
catcctttcctaggtgaccctagcaaggtgttgttgcttgcatgccatggttccatgcct
agctctgagcagaggttaatatttgaaaagccagaagatggagtgaggaaaatagttcta
gctactaatatggctgagactagcatcaccatcaatgatgtggtttttgtggttgattgt
ggaaaggcaaaagaaacatcctatgatgcattaaataatactccttgtttgcttccatct
tggatatcaaaggctgctgcccggcaaagaaggggaagagctggtcgtgttcaacctggc
gagtgttaccatctttatcccaaatgtgtttacgatacttttgctgattatcaacttcca
gagcttttaaggacaccattgcagtctttatgtttgcaaatcaaaagtctagagcttgga
ggtatcaccgagttcctttctagggcattgcagcctccagaacttctgtcggtacaaaat
gctgttgaatatctgaagattattggagctttagatgaaaacgagaatttgacagtgcta
ggacgcaacttgtcaatgcttcctgttgagcctaaactcggaaaaatgctgatactggga
gctattttgaactgtttggatccaataatgactgttgttgctgggctcagtgtccgtgat
ccattcctgatgccatttgataagaaggatcttgctgaaacggcaaaagcccaattcgct
ggccaggaatacagtgatcatattgcagttatccgagcctatgagggttggaaagaagct
gaaagggagcagtctggttatgagtattgttggaagaattttctttctgcacaaactctc
aaggctattcactctctacgaaagcagttcttctatttgctcaaggatgctggtctagtt
gatcaaaatgtagaaaactgcaataagtggagccacgatgaacatcttgtcagggcagtt
atttgtgctggcttgtttccagggatatgctctgttgtgaacaaagagaagtcaattgca
ctgaaaacaatggaggatggtcaagttcttttacactcgaattcggtgaatgctgaagtt
cccaaagttccatacccttggctggttttcaatgaaaaggtaaaagtgaatgcagtattc
ctccgcgattcaactggtgtttctgattccatactgctgttatttggagggaacatctct
agaggtggactagatggacatctgaagatgttgggaggatatttggagttcttcatgaaa
cctgctttagctgttatgtatttaagcgtgaaaagagagctagaagaactagttcagagg
aaacttttggatcctacattagacatgcattctagcaatgagctcctctcggcagtaaga
ttgctggtctcagaagatcgatgtgaaggtagatttgtctttggccgtcaggtgacgttg
tcttcaaagaaaacagctactattaaaacaccaggtaaaagcgaggctgataattcgaag
aatcatctgcaaacagtccttgccagggctggacatggaccacccacttacaagacaaag
caactaaagaacaaccagttccgatctacagtcatctttaatgggctggattttgttggg
cagtcttgtagcagcaagaaacttgcagagaaggatgcagctgctcaggctttgctgtgg
ttgaggggtgaagaccattcaacttcccgagatattgaccatgcctcattgcttcttaaa
aagagcaaaagccggaggaaaacttcagtcagtgatgctaagtggagtactaagtggagt
taa
DBGET
integrated database retrieval system
