Gossypium hirsutum (upland cotton): 107923959
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Entry
107923959 CDS
T04793
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107923959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107923959
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107923959
mRNA degradation factors
5'-3' decay
Decapping complex
107923959
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GFIT
Other DBs
NCBI-GeneID:
107923959
NCBI-ProteinID:
XP_040937254
UniProt:
A0ABM2Z3H0
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Position
A11:complement(20612689..20620318)
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AA seq
802 aa
AA seq
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MDRSDGKLHNNFSSLSSSVSGFADNALFDASQYEFFGQNAMEEVELGGLEDDEQDAPVFA
SPEDDEYHLFDKGEVVGLGSLSDVDDLATTFAKLNRVVTGPRNPGVIGDRSGSFSRESSS
AADWAQDGEYVNWMDQHLFDADDAQDGKRWSSQPQPYARVSDSKPLYRTSSYPEQQPQLH
RFSSEPIFGPKSNFISFPPPGSKCQQSSPAHLNISALSSGSQPPFSAASLSPLSNSSLHL
AGLSHGLHCGGNVPQLTSPGLSFSSRSHNHWVNHSGLLHGDHAGLLHYMLQQQIPHQNGL
ISPQLMSPQQQRLHHSVQPSLAHFAALQSQLYNAHPPSHKLMLGLADIRDQRTKSSQRKR
QSSRISQQNSDTGSQKSESGLVQFRSKYMSAEEIESILKMQHAATHSNDPYVDDYYHQAC
LAKRSFGSRGKHNFCPSHLKDLHSRSRNSGEQHLHLHADALGKAPLSSIRRPRPLLEVDP
PLGSGDGGSEQKTERPLEEEPMLAARITIEDGLSLLLDVDDIDRLIQFSQPQDGGIQLRR
RRQILLEGMAASLQLVDPLSKGAHAVKCVAKDDIVFLRLVSLAKGRKLVTRFLQLLIPGS
ELVRVVCMAIFRHLRLLFGGLSSDLEAAETTTNLAKTVSTCVNGMDLRALSACLVAVVCS
SEQPPLRPLGSPAGDGASVILKSVLERATQLLSYPSGNCSMPNYAFWRASFDEFFTLLTK
YCVNKYETIGQSIQNQSPTMEVIGSEAMRQEMPCELLRSSLPHTNEAQRKLLMDFSQRSV
PMNGANSHAGSTSQINSESVRG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatcgatccgatggcaaacttcacaacaacttctcctccttatcttcctcagttagt
ggttttgcagataatgcgctttttgatgcatcccagtatgaattttttggtcaaaatgct
atggaagaagtggagttggggggtctagaagacgatgaacaggatgctcctgtgtttgct
tcccctgaagatgatgagtaccatttgtttgataagggagaggttgtaggtttaggctct
ttatctgatgtggatgatctagctactacttttgcaaagttgaatagagttgttactggg
ccaagaaatccaggagttattggtgatagatctggatctttttcaagggaaagttcctct
gctgctgactgggctcaagatggagaatacgtaaactggatggatcagcatctttttgat
gcagatgatgctcaagacggcaagagatggtcttcgcagccacaaccatatgctcgtgtt
tctgactcaaagcctttgtatagaacttcttcatatcctgagcagcaaccccagctgcat
cgtttctcaagtgaaccaatttttgggccaaaatcgaacttcatatctttccctcctcct
ggtagcaaatgccagcagtcttcacctgctcacctcaatatttctgctctttccagtgga
tctcagccacccttctctgcagcaagcctctctccattgtccaactctagtcttcatctg
gctggtttatcccatggattgcattgtggtggtaatgtgccccagttaacatctcctggc
ctatcttttagtagcaggtcacataatcactgggttaaccactccggtctattacatgga
gatcatgctggtcttttgcattatatgttgcaacagcaaattcctcatcaaaatggtcta
atttccccacagttaatgtcaccacaacagcagagactgcaccattcggttcaaccttct
ttggctcattttgcagctttgcaatctcagctgtataatgctcatcctccatcacataaa
ttgatgcttggactagctgatattagggatcaacgaactaaatcatcacaaagaaagaga
cagagctcgcgtatttcccagcaaaactctgatactggtagccagaaaagtgagagtggg
ttggtgcaattcagatccaagtatatgtctgctgaagagatagagagcattcttaagatg
cagcatgctgccacacatagtaatgatccttatgtagatgattattaccaccaagcttgt
cttgccaaaagatcttttggatccaggggtaaacataatttttgtccatctcacctgaag
gatttacattctcgatcccgtaacagcggagagcagcatttgcatctacatgctgatgca
cttgggaaggcccccctctcttccattcgaagacctcgtcccctgcttgaagtcgatcct
cccttaggttcaggtgatggaggttctgaacagaaaactgagaggcctttagaggaggaa
cctatgcttgcagctagaatcaccattgaagatggtctgtctcttcttcttgatgtagat
gatattgaccggctcatacaatttagtcaaccccaggatggtgggatccagctcagacgg
aggcggcagatcctgcttgaaggtatggcagcatcactgcagcttgttgatccacttagc
aaaggtgcgcatgcagttaaatgtgttgccaaagacgacattgtgttcctaagattagtc
tctcttgcaaagggccgtaagctggtcaccaggttccttcagcttcttatccctggaagt
gagcttgttcgagtagtgtgcatggcaattttccgtcacttgagactcttgtttggtggt
ctttcttctgatctggaagcagctgagacaactactaatcttgcaaagactgtttctaca
tgtgttaatggtatggatcttcgtgctctcagcgcttgccttgtagcagttgtttgttct
tcagagcagccaccacttaggcccctgggaagccctgctggggatggtgcttctgttatt
ctgaaatcagttcttgaaagggccactcaacttttaagttatccttctggaaattgcagc
atgccaaattatgctttctggagggcgtcatttgatgaatttttcactcttcttaccaag
tattgcgtgaataaatatgagacgatcgggcaatcaatacagaaccagtctccaacaatg
gaagtgattggttcagaggcaatgaggcaagaaatgccttgtgagcttcttcgttctagt
cttcctcacacaaatgaagctcagaggaagcttttaatggacttttcccagcgttctgta
cccatgaacggagccaattcccatgctgggagtaccagccaaataaactctgaatcagtg
aggggttaa
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